© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0007300.1
CCACTCTGAATATGCAAGCTCTTGATATTTCATTTAGACTTCACATGTCAGTCATGCAAGCTCTGAATGTGCATTTGTTCAGTGATACATGATGCATGCATGCATGCTGAAATGATTCCAGAGCTAACGTAGCAATCTTTAGCTTGACTGCTTGTGTTCACTTCAAGCAGCCATGTTAATAGGCCCATCAGCTTAGTTATAAAGTCTGTCCTGACATTTTCCTACTAAACCATCAGCTTAAGAAGTCCTTATTAGTCCGCTCCTGCTCCTATATTGCTGTTACAATACTACATACGCCAAACTTCATACAAATTAACTATCCCTAAATGCGATGCTACTTCACTTGCGGTACTTCTTGGTAAATCTGAAGTTGCGGAGAAGTTGGAGCGAGCAAACCACAGCGTTACCCTCATTCTTGACCGTGTAGAAATGGCACAATGCACGGCCGGCAACTTTCCAAGCGAAGCCACATCTGGCGACGTTGTTGGCAGACCGTGCTTTCTCATACGCGATCTGGTAGATTGCACAGGCCTCGGAGAACACGTCGTCGAGGTCCCTCGGTGTCTCTTCAAATTCAGATGCACCGTAGAGCAAATGCTTGTACTTTTCATAGAGTTCCTGAAACTTTATCTTCTTTTCTTCTTCATCCGCCTCTTCGGCATAGAGAAGTGAACTATCAGCCAAGTACTCGTTATAGCGGTGTTGCCAGAGTTGCTTGATTGCTGGAGGCACGTCTCTCTCCGCGAAACATGGGAGCGATGATATACTGGTTGGTTGAACATTATCAGATCGCAGCGGTTTTGGATCACCTGCTTTATCATAGATTTTTCCAAGTATGGACGACGAATGGTACGAAGGACTGCGGTCCATGAAGTGGGGGTATTGTTTTACCATTAGATCACGTGGAATATTGACCTTGTTCCCCATCTTTGGAGCATCCAAAGCCAAATAATAAAGGTCAACTAACTTGAGCATCTTTTTCTCAATTAGTTTCTTTTCACTTTCGTCAAGTGAAACAGTTAATAGCCGATCCATATATACTAACCAGTTAGTAGCTGCCGTAGCACGCGCATAACTAGGTGCAAATCTTGTTTTCAAGAACTCATGAAATAGCACTCTTTCAAGCTCGGATTCATTAAAATCCTCGGGTCCCTTTTGCTTGGTCCCATTTGGTGTAATAGCTGGAACCCATGGTTTCGAAGGTTTAAAATGTTCTAACAGCTTTGGGTTTAATGAGACCCAGTAGATGTCACCATCAAAATCACTATTGGCCATCTCATCAGCCAAAGACCGTTGTCCAGTAGTAGGGAAGAGTATCGCATGTTTAGAATTTCCCACAACCTTCTCTATGTCGCTACTATATGTTGCCTTCAAGACATGTATATCACCAGGATGTAAGCCAGGATATTTATACACAAGAACATCTCCAGAAACTTGGCCATAATCAAGTATCACGCAGACTTCATTAGGTCCAAGTTTTCCTGTAGGGTCTGCAGTACCCATCAAATAATAGCAGTCATCAATTGGTATCTTTCCATTCTTGATTCCTTTTCTTTCCAGTAGAGACAAGAAATCCAGCCTAGATTGCAAGTACGACTCTTCTAGTGGGATTCCGGAAAGAATCATCCGTGCTGGCATTGAATCTTCCATGTCAGCATAGTTGAATGCAATGTTCAGTGCGCCAGCATAATCAAAACGAGCATTGTCAGCCTCTTCAATCGCAGTCTGCAGAAGCTCCATAAAGAATTCTTCTGGAACTCCTCCATAGTGAAGTAATGCAATTAAATTATTTGATGTGAATGTCCTTCCTGATCGATTGCTTGTAGAGACTATTTCAAAAGAATTCACGGACTGAACCCCAGATAGACTTTTCTTGGCATTTCGTGCAGAGACTATGTCCAATGAGTTGACAGATTGGACACCAGATAATTCTGGATAAGTTTTTATTTTTAACATTGATGGTCGGATATGTATAGTCCTAGGAGGAAGCCGCTTGTCAACTAGGACTGTTCCCTTTACAGCAGATCCATTGTAGAACAGGCGGAGTTGAATAAGAAGAGGATATTCAGTGGTGTTGTTAGACCCCATCAATTTGCTTGCAGCACAATCCACAATGTCCTGTGGCTCCAACAATTTTCCCTTTGAGTTACTATAAGTGCATTTCTGAGCCAAATCTTCAGATATAAGGCCTGTCCCGTCAGTATGTATCAACCGCTCCCCATCTCTAAAAACTTCTTTGCCATGTTCATCCAAGCAAGGCTCATCATCAATGAGTTTGACAAGAACTTCTGATAAATCAACATCCAATGTGATAGTTTTGGAGACTATCAAAGCAAACCTGAGCATATATTTCGCCAAGGTGAGAACAGTACGGATGTGCATGAATAGGTCACGAGCCTGACCAATCGTTCTGCCAGAGAGTATGTAAGGTTCATCCATGTTCCACCCAGACTCAGTGCGAACAAAGTAGCATCTGACAGATGAAGTACATTTCTTGTTTTCTTCTTCTCTATTCTCTTCTTTCATTTTATTCTCTTTCCCGCCGTCCTTGTAAAGGAAAAATCGATAGCAGCGCAAACCCAAAACAATACCCTCTTCAGCAACCTTATGGTAGTGTTCCAAATAGGTAGACAAATCAGTCTCAGTGTCTGAAGATATCTCCATAAATTTTACTACAAGGACGTTATCATCACCAAGAACTTTCTGAAGATGAGTCCTCCTATTCTCAATATATGGTCCCTTGAAAATTTTGACAACTGTACCCCCTCTTATCTCAACATTACAATGGTAGACTTTTGACATACCTGGACCAGAATCAAGGTTCTTTGCTCTATCTGAAGATGATATATTATCGTGACCAAATGTGCTCCAGATTCGTGACTCAAATTGAGCCATGGACATTGACTTCAAGGATCTGATACTGTCCACGGAGAGGACATCTTCTATCTTACTACTTTTTGGTGTAGATAATGGAGGCTTTACTCCTTTCTTATTCCAGGAAAGATAAGCAAAAATCATAAATATCTTCCTGAACTCCAACTCTCCCAGCGCTAGCATCTGAGGGCTCACTACCTCCCTCAACACATTGGTCGTGTCAGGACAGATTGCTGGAGGAATTTGCGGCATCACCCAAATGGGACATGGAGGACTTCCTGAGGGGCCAGCCATATTCTCGACACATCTTGATAGATCCCGCACAGGGCTCGGGGTGGAAACTCTTTCTGGAGTAGAAACGATCGGCTGGATGGGGCTGTCAATCTCCATATGTCTCTGCAGCCCAGATGGCATGCGGTGGCCAGGGCTACCAACCTGGTTGGACGCAGGAGAAACCATTCCACGGGAAGGCGTATAACCTTCAACGCAGTTCTGGTTCTGCAGCAGCACAGAAGATATTCGACCATATGGGCTCCCAACTGCTGGGTTAGCAAGGTCCGGAACCACACGAGCAATATGTCCGACAGAACCGCCATTGTCATGCAAACGGAGCGGCATCTGTTGGTTGGGACTCCCAACCTCCACCATGTCGTTGGGTGTTTGAGCATCCATTTGAACCTCATTGTAGTACAGTGGAGTGGATATAGATTCCTCTTCGCGGCAGGGGCCGGAGATGCATGCGGCGCTGTGGGCGGTGGGGATGCCCCGCGCGTTGCGCTTCATCCTCTCCTGGTTCGCCATGTGCCTGATGAAGCCGGAGAGCGTACGGACCTGGCGCGCCTCCCCAATCGCCCGGAGCACCCGCGCCGCCGCCGGCTCGCCGAGCTCCGCGAGCTGCCG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0007300.1 | 1 | 5319979 | A | G |
| Osa01LNT0007300.1 | 1 | 5308556 | C | T |
| Osa01LNT0007300.1 | 1 | 5308691 | G | A |
| Osa01LNT0007300.1 | 1 | 5308753 | C | T |
| Osa01LNT0007300.1 | 1 | 5308892 | A | G |
| Osa01LNT0007300.1 | 1 | 5308925 | T | C |
| Osa01LNT0007300.1 | 1 | 5309388 | A | C |
| Osa01LNT0007300.1 | 1 | 5311248 | A | G |
| Osa01LNT0007300.1 | 1 | 5311305 | A | G |
| Osa01LNT0007300.1 | 1 | 5312157 | T | C |
| Osa01LNT0007300.1 | 1 | 5312295 | A | G |
| Osa01LNT0007300.1 | 1 | 5313606 | C | T |
| Osa01LNT0007300.1 | 1 | 5315013 | T | A |
| Osa01LNT0007300.1 | 1 | 5315775 | A | G |
| Osa01LNT0007300.1 | 1 | 5316173 | T | C |
| Osa01LNT0007300.1 | 1 | 5316658 | A | G |
| Osa01LNT0007300.1 | 1 | 5317439 | A | G |
| Osa01LNT0007300.1 | 1 | 5317489 | C | T |
| Osa01LNT0007300.1 | 1 | 5317761 | A | G |
| Osa01LNT0007300.1 | 1 | 5317915 | A | G |
| Osa01LNT0007300.1 | 1 | 5318245 | C | T |
| Osa01LNT0007300.1 | 1 | 5318688 | A | G |
| Osa01LNT0007300.1 | 1 | 5319029 | T | G |
| Osa01LNT0007300.1 | 1 | 5319997 | C | T |
| Osa01LNT0007300.1 | 1 | 5321341 | A | C |
| Osa01LNT0007300.1 | 1 | 5323132 | G | A |
| Osa01LNT0007300.1 | 1 | 5321690 | C | T |
| Osa01LNT0007300.1 | 1 | 5322057 | C | A |
| Osa01LNT0007300.1 | 1 | 5322120 | C | G |
| Osa01LNT0007300.1 | 1 | 5322801 | C | T |
| Osa01LNT0007300.1 | 1 | 5324191 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0007300.1 | osa-miR6245 | Cleavage | 4.0 | 19.678 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR1440b | Cleavage | 3.5 | 19.988 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR1440b | Cleavage | 5.0 | 12.772 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR393a | Translation | 4.0 | 14.217 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR166g-5p | Translation | 4.5 | 17.949 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR393b-5p | Translation | 4.0 | 14.217 | 1 | 22 |
| Osa01LNT0007300.1 | osa-miR413 | Translation | 5.0 | 16.818 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR814a | Translation | 4.5 | 21.215 | 1 | 22 |
| Osa01LNT0007300.1 | osa-miR814b | Translation | 4.5 | 21.215 | 1 | 22 |
| Osa01LNT0007300.1 | osa-miR814c | Translation | 4.5 | 21.215 | 1 | 22 |
| Osa01LNT0007300.1 | osa-miR1428b | Cleavage | 5.0 | 20.034 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR1428c | Cleavage | 5.0 | 20.034 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR1428d | Cleavage | 5.0 | 20.034 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR2101-5p | Translation | 5.0 | 14.764 | 1 | 22 |
| Osa01LNT0007300.1 | osa-miR2875 | Translation | 5.0 | 21.621 | 1 | 24 |
| Osa01LNT0007300.1 | osa-miR2918 | Cleavage | 4.5 | 21.282 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR2931 | Translation | 4.5 | 17.251 | 1 | 20 |
| Osa01LNT0007300.1 | osa-miR3980a-5p | Cleavage | 5.0 | 22.034 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR3980b-5p | Cleavage | 5.0 | 22.034 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR5144-5p | Cleavage | 4.0 | 19.803 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR5486 | Cleavage | 4.0 | 11.744 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR5492 | Translation | 4.5 | 12.357 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR5492 | Cleavage | 4.5 | 7.188 | 1 | 21 |
| Osa01LNT0007300.1 | osa-miR5492 | Cleavage | 5.0 | 6.947 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0007300.1 | 1 | nan | Physiological trait | Source activity | RG532 | RG472 |
| Osa01LNT0007300.1 | 1 | dn1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0007300.1 | 1 | sp1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0007300.1 | 1 | qTNSP-1-1 | Morphological trait | Panicle/flower | RM1 | RG532 |
| Osa01LNT0007300.1 | 1 | gn1 | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0007300.1 | 1 | gp1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0007300.1 | 1 | gw1a | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0007300.1 | 1 | qLS1-2 | Morphological trait | Shoot/Seedling | G359 | RG532 |
| Osa01LNT0007300.1 | 1 | qSS1-2 | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0007300.1 | 1 | qSSB1-1 | Morphological trait | Panicle/flower | RG532 | G359 |
| Osa01LNT0007300.1 | 1 | qSW1-3 | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0007300.1 | 1 | qFLL-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0007300.1 | 1 | qFLP-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0007300.1 | 1 | nan | Resistance or Tolerance | Lodging resistance | R1944 | C955 |
| Osa01LNT0007300.1 | 1 | ph1.1 | Morphological trait | Dwarf | RM220 | RM272 |
| Osa01LNT0007300.1 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0007300.1 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0007300.1 | 1 | Rf3 | Physiological trait | Sterility | nan | nan |
| Osa01LNT0007300.1 | 1 | ppp1.1 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0007300.1 | 1 | prg1.2 | Physiological trait | Source activity | RG140 | RM243 |
| Osa01LNT0007300.1 | 1 | spp1.2 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0007300.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0007300.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0007300.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)