>Osa11LNT0090600.1

GCCCCCAAAACCCCTAAAATGACATAGTTATACAGATTGCTCAATGTTCCAGACTTCCAGGAATGCAATCTGACAATCCAGATAGAGAACAATAAAGAATTTAATCTAGTATTATTTCCCTGTTCTCTCTAATAGATAAAATATTCGTATTTGACCATCTAATACACCCTTATGAACTAATCTTCTGTAGCAAAACTGAAAATCCTAGACTATTTGTTTGTATCTTCAGCTCCTTTCGTAGGTACACTTAGTTAATAGGTGGGTGGGTTGTATTCGGGAGTCTCCGTCCAAGTGCGAATGATTGAAAAAGTCCGAGAGCTCGGTCTGGCTGCGCAAATGGCACCATGTGAGATGCTCCTCGCACCGTCGCAAAGGTCAGAATATTACCATACTCTGTTACCCAGCCTCCAACCTGCCCTCTGCGGAACCAGCTGCTGTATGGGACTGTGACATGCAAGCCCATGTCATGAGCTAGCTCTCGTACAAGAGTTCGGGAGCCCAATAGGGGCACCACAGAGTCTTGATCTCCACTGAACACCCAAACTGGTATTTTGTGCTCTACAATTCTCTGAAGTAATGGCAAGATGTTGATGTTGCCATCCTTATTGCTGTAGTTCAGCACATCGCTGCACATGCTCCAGCCATAGGGCAAATGTGTTCTGTTAGCATGAAGAGCTTGCTGCACTTCTGGAAGGTTGAAATAGAAATACCTTTCGTAAGTCATACAAACATCCACACCTACACTCATTTTAGTCACATATTTCCGCAGCCGTAGCTCCTGCATCACAATTGATGGGTAGCACACATCAAGAATAACATCGTAATTGTTCACATAATCCCCAACTATACTGTTTGCCTCTGCAATGGCATCATTGCATGACTTGCTCTCATTGTGGGGGTTGCTAAAGGTATAGTCCTCAAAATCACAACTGTGGCTGATTGATAGAAATATTTCGTCAGAGATCATGCCATGGGACCAGAAATACTCATATGTTGCGGGGACATCTCTGTCAAGCTTGAGAAGCGGATTCCCGATAGCTACTCCCTTGATGTTGAATTTGAACCCATTTGATTTCTCATTATGTGTGAGAAGTACATCGGTGAGTTGCGGTATATAATGCCCTGCATAGCTCTCTCCACTAAGAAGTAGCCCTCTTGACCTGTATTCAGGGAACTTCTTGTACCATCCCAACAGAAATTTGTACATGTCATTAGCGGTCTGTGCATCGCCAGTATTGTAATCTGATGAAGTGTTGGAGTAGGACCATCCAACTCCAGCCGGTGATTCAACAAACAGAAGATTGGATACTTTGTTCCAAGACTTCTTGTTCAATCTCAGGCCTCTGCCATCTCCTCTCGGATAAAATGGGCCGAGCTCTGTGAACGCGCCACCTCCAACCGAAGAACATCCAGGACCTGATAACAACATGGCCAGCGGTTATAAATCAGTTAATCTTACAGCAAACATTGGCAATCAGCAAGTCACATTTGATTCTGTAGCATTAAAGTTGTTCACAGTTCATTATGTGACAATGTATTGTTCCATGGAAAAAATTCACCCCTAACTTCATTTTGTGCATGGAATGATGGAGATGAAACCAAATGATACCTAAAACTGGTCTAAAAATGCTACCTAAAACTTTAGGTAGTCTTTTGCTACATGGAAATCATTTCTTTAGGTAGTCTTTTGCTACATGGAAATCAAATGATGCATCACTTCTTTTTAAATGCTCTAGGACCACATCACACAGACACCAATGAGGCAAGGGTCCAAGGACACATGGTGACCTCAAAGATACCCTATTCCTCCTTTGCAAGTTGCAAAGTAGTAGGAGTACTAGTGAAAAGGATATCAACATGCAAGTTAAAATTATTTTTGATTTCTTTTTTCTTGGAAGGTGTAGAGCAGATGTAGTTCTTTTTATGTTTCCAGTTCAGGAAACACCTCCTGCCATCATAGTCCCCTCCGTTGAGCCAGAGGGTGAGCGGCTTGGCGGCGGCGCCCTCCGCCGCCTCGGCGAAGTAGTAGAAGAGGCTCCTCCCGGCCTTCTCGTCGACGTCGACGTATCCGGCGAACTGCCTGAACCCGACGACGGGCTGCCCCGGCAGCCGCGCCACCAAATCCTCCTCCGGGAACCCCCACACACCACCAAGAAGAACGCAACCAACCACCACCGCCACCGCCGCCGCCATTGTCGCCGGCGAGCGAGCTCGCAGCAACTGAATTGCGCGCTTGCCGCAGCGGATGGAGAAGAGGAGGAGAAGTGGGTGGGTTCTTGAAGTTGAAGCTTGGGAAGAGAT

Explanation	CPC Score
noncoding (weak)	-0.710025

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0090600.1	11	5899130	T	C
Osa11LNT0090600.1	11	5899807	G	A
Osa11LNT0090600.1	11	5900585	A	G
Osa11LNT0090600.1	11	5900588	G	T
Osa11LNT0090600.1	11	5900614	A	C
Osa11LNT0090600.1	11	5900664	C	T
Osa11LNT0090600.1	11	5901658	T	C
Osa11LNT0090600.1	11	5901845	T	C
Osa11LNT0090600.1	11	5901990	T	A
Osa11LNT0090600.1	11	5902354	A	G
Osa11LNT0090600.1	11	5902556	G	A
Osa11LNT0090600.1	11	5902578	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0090600.1	osa-miR5833	Translation	4.0	23.536	1	21
Osa11LNT0090600.1	osa-miR1429-3p	Cleavage	5.0	21.555	1	21
Osa11LNT0090600.1	osa-miR810b.2	Cleavage	4.5	21.963	1	21
Osa11LNT0090600.1	osa-miR1846e	Cleavage	4.0	21.793	1	20
Osa11LNT0090600.1	osa-miR2106	Cleavage	4.5	17.548	1	21
Osa11LNT0090600.1	osa-miR5158	Translation	5.0	20.419	1	24
Osa11LNT0090600.1	osa-miR5340	Translation	3.0	16.595	1	23
Osa11LNT0090600.1	osa-miR5500	Cleavage	4.0	20.135	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0090600.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0090600.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0090600.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0090600.1	11	fer11	Resistance or Tolerance	Cold tolerance	RM3701	RM552
Osa11LNT0090600.1	11	dc11	Resistance or Tolerance	Cold tolerance	RM552	RM3137

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus