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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0090700.1

ATTTATTTTATTATTTGTTTTATTGTGATTAATTTTATCATTTAAGACTTCTATTTTTGCATAATTGTATAAGATTTTTAAATACGATAAATGGTTAAAACGCATATAAAAATTGACGGCGTCAAAAGAACCAATAGAGTAGTACTAACTAAAGCGAAGTTTTTCTTTTCGAAAATGACAAGAAAGGAGTAAAAAAATTATATGCAAGGATTGACCCTGTTTGAGAGAGCTTCTAGCTGCTGCAGTTTCTTCCAGAATCAGAAGCTCCCCCAAACAGTTCAGCTTTTGGTCTAGATTTTGAGAAGCTGTAATTGTATAAACCAGAAAATAAACTAGGGCCATGTTTAGTTCCAAAGTTTTTCTTCAAACTTTCAACTTTTCCATCACATCAAAACTTTCTTACACACACAAACTTCCAACTTTTCCATCACATTGTTACAATTTCATCCAAACTTTCAATTTTAGTGTGAACTAAACACAGCCTAGAAGCTATAAGCTGGGAAACCCAGCTTTTCCAGATTCTCATAAGCTGGCTACCGACCAGCTACTTCGCAGAATCTTAAGCTCCCCAAACAGACCCTATATTTCCTTGCACTTAGCTAATACTTCCTCT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.171724
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0090700.1 osa-miR395b Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395d Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395e Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395g Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395h Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395i Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395j Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395k Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395l Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395s Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395t Cleavage 4.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395c Cleavage 4.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395a Translation 4.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395f Cleavage 2.5 24.09 1 21
Osa11LNT0090700.1 osa-miR443 Translation 3.5 10.646 1 22
Osa11LNT0090700.1 osa-miR395m Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395n Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395o Cleavage 4.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395p Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395q Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395w Cleavage 4.0 24.09 1 22
Osa11LNT0090700.1 osa-miR395r Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR1850.1 Cleavage 4.0 7.823 1 21
Osa11LNT0090700.1 osa-miR1850.1 Cleavage 4.0 3.343 1 21
Osa11LNT0090700.1 osa-miR1850.3 Cleavage 3.5 8.834 1 22
Osa11LNT0090700.1 osa-miR1864 Translation 4.0 3.135 1 24
Osa11LNT0090700.1 osa-miR395x Cleavage 4.5 24.09 1 21
Osa11LNT0090700.1 osa-miR395y Cleavage 3.5 24.09 1 21
Osa11LNT0090700.1 osa-miR5150-3p Cleavage 3.0 23.279 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0090700.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0090700.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0090700.1 11 dc11 Resistance or Tolerance Cold tolerance RM552 RM3137
Osa11LNT0090700.1 11 fer11 Resistance or Tolerance Cold tolerance RM3701 RM552
Osa11LNT0090700.1 11 nan Morphological trait Seed RM332 RM229
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus