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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0091500.1

GGCATTCATACCTCTCACATTCCAATTGAACAGGGCTACATTATCTTGTGACATAATCTAAAAAGCATCTAAACACACTCCGCATAGCAGAAACACAACCAGGTAAACTGGAAGAAACACAGCTAGCATTGAGGTGGATATGCTTTAAAAGGCCGGGTGAGACAGAGCCGAAACGGGGCTCCGATAGGTGACAGATACACATTTCAGGATCACTAACAAGCAGACGAAACAGAGTACATCGAAAGACATGGCAGCTACACTCGGGGGACATCGGCCTTGGCAGTGGAATCATTGGAGACAAAATCTGCTTCGCTTGAACTGTAAGCCGGTCGGAGGCAGTCACAGGGGCGCCACTGCCGCATTTTTCTTCAAATTCTTCATCCCGATCGTCTTGCACCCTCCCTTTTCAACCAAGTCGGCGATTATCTTCAGTGATGCTGGCGAGAGAGGCTTCTTGTACCGCTTTGCACGGGAAGGCTTCCGTGCATTGACGTCGGGGGCTGGCAGGAGAGGCGGCTGGACTGGAGTTGCAAGGCCGTTGATGAAGCTGTCAATCTTCATTGCCTTGCACGCAGAAGGTGTGTCTGCTCCTGCATGTCCTGTAGAAGTAGGCACAAAAACAGGGGAAGAGACACGAGGGGAGGAAGTATCTGGAGAATAGATGGAATGATGCACGGCTGCTTCATGAAGCATTGGGTCGAGATGGCTCTCCAAAATGTCGAGGATGTCCACACGCCCCTCAAATAACCCTGCCGAATCTGGAAAGAAGCGGTGGACGGCCGACCTCACGGGCCGCCGGCGACCTCGGGAGTTACCAAGGCGGCGGATCTGATGCGCCGGCGGCCGGCGGCGGGCGGCGGAGAGGCGGAGACCCCTAGAAAACGCTCGCCGCTCGCCGCCCTTGGAGAGCGGCGTCAATGATCGTCCGTGCTCGTCGCCGGCGAGCGCTTGCTGGGCCTGGGCCTTCTACGGTGCGGCCCCAAGTGAAATCCGGCCCACTGCTCAGGCCAGTTGTGAATGAAGCTATTCCTGCTAAAGTGTGTGTGCATTCTTCTGGTGTTCTTGACCTCATATTTAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.969711
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa11LNT0091500.1 DTM_#DNAt_MULE_japo_Os0301 Chr11 - 6691991 6692561 570
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0091500.1 osa-miR5795 Cleavage 5.0 18.868 1 22
Osa11LNT0091500.1 osa-miR395t Cleavage 4.5 18.193 1 21
Osa11LNT0091500.1 osa-miR395c Cleavage 4.5 18.193 1 21
Osa11LNT0091500.1 osa-miR395u Cleavage 4.0 18.193 1 21
Osa11LNT0091500.1 osa-miR396c-3p Translation 4.5 9.791 1 21
Osa11LNT0091500.1 osa-miR535-3p Cleavage 5.0 15.695 1 21
Osa11LNT0091500.1 osa-miR395o Cleavage 4.0 18.193 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0091500.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0091500.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0091500.1 11 Tid1 Morphological trait Dwarf nan nan
Osa11LNT0091500.1 11 fer11 Resistance or Tolerance Cold tolerance RM3701 RM552
Osa11LNT0091500.1 11 nan Morphological trait Seed RM332 RM229
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus