Transcript

Sequence

>Osa11LNT0091800.1

TGATAGTGTATATGCAAACAGATTTTGATACATATATATTTATGGTACTCTGTAGAGAACTAATGACGACACTAATTTGTGAAGTTCCCTAGATCTGTTGAAATCGACATATTGCATAGCCAATCTTAGGTATGATGATATACATTTGCAAAGTAATGATTTATATTACATTGTCATGACTCACAAACACACATTTGCTTAACTAGTTGCACGTTGTGTGCTCTTTTTGCTGGTTACTTTGACGATTATGTGATGATGCATGTTATCTCCAGATTGATCAGGATCCAAACATTGGATCTTGATTTGGACACCCCATAGCAACTGGCAGCCTTTGTAGTAATAACTTGGCTCTGATTGCCTGGTCTTCTCTGTTAAATCTTTCTAGCTTTGCCCCTTGTGTAACCTGGGTCCATACTTCCACCTTTCCTTTCTAGTGTAGTCAGCTTACTTCTTTTAAACTGCCAGCACAGGGCTCCTCTTCTTCGTTTCCTCCGCTGATTCCTCCTCTTCTTCCCTCCTTCTCTTCTCTCTCTTGTCACTTTGCGCCCGTCTTGTAGCCATAGGTGGTGCGCACAACTCGGTGGCCAGGGCGACAAATGCATCCCGATGACCTCCATTATGTACTTCTCCATGCTTCCTCGTCCATGCTACTTTTCGAAGCCCAAAATTCGATAGAATTTGCATGAGCTCAGCCAAGCTTTAATTGCTTGAAATCTGGTTCTGCGACACCTACAATTACGCAAATCCGTGTCGATCCATCCACCGGCCCCGGCGTTCGCGATCCCGCCGCTCCAGACCCTTCGCCGCCGCGCCGCCGCCGGCCGGCGACGGCGGCGAGGCGGCAACCGCCTTGGGGGAGAGAAGCAGGTGGGCGTCCTCCATGATTGCCACAGCTG

Coding Potentia

Explanation	CPC Score
noncoding	-1.21681

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0091800.1	11	7212910	T	C
Osa11LNT0091800.1	11	7200383	G	A
Osa11LNT0091800.1	11	7200695	A	T
Osa11LNT0091800.1	11	7200766	G	T
Osa11LNT0091800.1	11	7200817	G	T
Osa11LNT0091800.1	11	7201665	A	T
Osa11LNT0091800.1	11	7202122	C	A
Osa11LNT0091800.1	11	7202588	A	G
Osa11LNT0091800.1	11	7202599	A	T
Osa11LNT0091800.1	11	7202726	A	G
Osa11LNT0091800.1	11	7202855	T	G
Osa11LNT0091800.1	11	7204598	C	G
Osa11LNT0091800.1	11	7205056	C	T
Osa11LNT0091800.1	11	7206819	C	T
Osa11LNT0091800.1	11	7206778	A	T
Osa11LNT0091800.1	11	7208354	C	T
Osa11LNT0091800.1	11	7208500	T	C
Osa11LNT0091800.1	11	7208677	A	C
Osa11LNT0091800.1	11	7208838	T	C
Osa11LNT0091800.1	11	7209247	G	C
Osa11LNT0091800.1	11	7209883	G	C
Osa11LNT0091800.1	11	7210350	A	C
Osa11LNT0091800.1	11	7210763	T	C
Osa11LNT0091800.1	11	7210874	A	G
Osa11LNT0091800.1	11	7210901	T	C
Osa11LNT0091800.1	11	7211066	G	A
Osa11LNT0091800.1	11	7211106	T	C
Osa11LNT0091800.1	11	7211400	G	A
Osa11LNT0091800.1	11	7211553	A	G
Osa11LNT0091800.1	11	7212559	A	G
Osa11LNT0091800.1	11	7212594	A	G
Osa11LNT0091800.1	11	7213465	G	C
Osa11LNT0091800.1	11	7213664	A	G
Osa11LNT0091800.1	11	7213710	T	C
Osa11LNT0091800.1	11	7213751	C	A
Osa11LNT0091800.1	11	7213922	G	T
Osa11LNT0091800.1	11	7213301	C	T
Osa11LNT0091800.1	11	7203871	G	A
Osa11LNT0091800.1	11	7206489	A	C
Osa11LNT0091800.1	11	7206973	G	A
Osa11LNT0091800.1	11	7207189	A	T
Osa11LNT0091800.1	11	7207608	A	G
Osa11LNT0091800.1	11	7212067	T	C
Osa11LNT0091800.1	11	7208922	T	A

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa11LNT0091800.1	DTM_#DNAt_MULE_japo_Os0360	Chr11	-	7206920	7207639	719
Osa11LNT0091800.1	DTM_#DNAt_MULE_japo_Os2081	Chr11	-	7211789	7212172	383

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0091800.1	osa-miR5807	Cleavage	4.0	11.37	1	24
Osa11LNT0091800.1	osa-miR5826	Cleavage	5.0	13.039	1	24
Osa11LNT0091800.1	osa-miR437	Cleavage	3.0	12.047	1	21
Osa11LNT0091800.1	osa-miR1849	Translation	4.5	13.611	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0091800.1	11	Tid1	Morphological trait	Dwarf	nan	nan
Osa11LNT0091800.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0091800.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0091800.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0091800.1	11	fer11	Resistance or Tolerance	Cold tolerance	RM3701	RM552

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus