>Osa11LNT0092500.2

ATAATATTTAACATATATTCATCAATAAATTCCGTAGCAAAGTGCGAGGTATCACCTAGTGTATTAGTATAATACTGCTAGAGAAACAAAACATGAGTGCTCATCGCAGAATGTTAATCACAAAACGCATTTCCAAGAGCGTAAATAACTTATCTATAAGACTACTCCGTTACTGCCAATCAATTCAATGGCCATACACAGTAAGAAAATACAAAAGGTGGTTACTACATTACAAGAAGCTCATTAGCTACAGGAACGAAAGCTTCCTAAAGAATCCACTGCTGCTTTGCTGTTCCTCTCGCAGCAGCACAAAAGCTCTGTTGTGAAGACTAGCAATCGCCGTATATAACAACTCAAGCTAAGTTGGTTCTGACCATTAGCTCTTCTCATTCAACTAGAGACTTAGCTACAACTGGGCTGCAAGGATCTCATTCCATGTATCTGGTAGTCCAGGAAGGCACCAGTGCAAGCAATCTTGAACTCCCTGCGTGGCTTTGATACTGTACCGCGATATATGCCCTTCATCTCTCAATCGTGATAGTGCAGTTATATCCAAAAGCTTCACCCTTGTTCCCATCACGGCTCCCTCGGCATCGGCGTCATCGGAATGATTTTGGGAAATGCCACTTCCCTTGGCCAAAGGACTTGTATTATCACAGCGACCCCCGGTGTTCCAATCTCCATTGAAGAAATGCCGAGGAGATATTGACCTGTAGAACACCTTCAGTTGTGGGTGGTGAGGAAGTTGGGTATCCAACCACTTAATAACAGTGTGGATGGTGATATTTTTGGCCTTCCAGATGACAGCAGTATTCCTGTTAGTGTTTGGTGCTCCCCCAAGATACATTTCCCACTTGTTTGCCCTTAGCTTCCCTCGGTTCCAGTGGTGACCAGTGTTAAGAACCAGAACATGGAGCCTGTGAAGGTTATTCTTCAGAAAAGCAGGTGGACGATCAAGGTGCATGGCATAACTGGTGGCTGGATCTGATGGATCCAGAGGCTCCAAATCACAGAGTGTCGACGACCAATGGTATAAAATGGTTGTATTAGTTCTTGGGAATCGGTAGGCCCAGCCATCTGGTCTTTTTGCACCCGGAGCTAAGAAAAAACCATACTCTGCACCAACGTCTTCCACATCTAGTCTCTCCTTTCCACCAGTGACCATACACATCATTGATTGAAACATTTGCCTCCCTAAAGAATCACCCACATAAGCAATGGTTTTATCCTCGTCAAGAACTGTGAGGCCTCAAATTCTGGCATCTCACAACCTTCAGGTTGCCATCTAAATTTTTCATAAGCAAAATCTGTGCGCTGGGTTAGTCTGCAGGCCCAGCTCTCGGAAAGCCATTGTTTACAGCCGAAACCGGAGTATAGTGGTCTGTTGTTGTCAGAAACCCATTTTCCATTTCCGTAGTTACAATCTTTCTTCCCAGAAGGCGGTGGTTCCCTTTCATCCGCAACATCAGCAGAATCACTTGCTATGGACATCGGTGGTGGTGCATCACTTACTTGCTGTTCTACTTTAACTACTGATTGTGTCAATGTATCTGCATTCGGAAAGTCTTCTTCGGATGATGTATGCTGATCTACAAACTTTGAGTTAGCTGGATGAGCCAAAATCAATGAATCTGGCCGGAGGATTTCAGTAGTGTAGTATGTTCCTCTCTCCCATTTCCAGAGAAGAAACATCATGAAAAAAGCAAGAATGACAAGTTTAAGCTGCTTGCACCGCAGTCCATTTATGCTTCCTAGTCTCATCCCTTTTTTATGTTCTTGAACAACCTTTTTTCTTCTCTTGAAATCCAGTATGACCCTGGACGTGTAGCGTTAGGCAGATAATAGTGGCACCGATGCTGAGAGCCTGGACCACGGCGTGGTCGACGTTCTCCTTGGGCAAGAGGCGGCGAGAGGGGGAATCGTGCTAGGATATCAAAATTCTGAACATCAACAATCCAACATACTGCTATACAATAGTTGAACCACCAGGATCCCCTCCCCTCCGCTGCGATGGAGATCGCCGCCCGGCCCTCCCCCTGTTCAGCCGCGACTCGTCTTGGCGGCGGCGCAAGGAGGCGAGGAGCGGAGGAGACAACGAGAGGTTTCTTTTTCTTTTAACGCGATACTC

Explanation	CPC Score
noncoding	-1.26438

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0092500.2	11	7584788	G	A
Osa11LNT0092500.2	11	7584794	A	G
Osa11LNT0092500.2	11	7586995	G	A
Osa11LNT0092500.2	11	7587440	A	G
Osa11LNT0092500.2	11	7587471	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0092500.2	osa-miR5337b	Cleavage	4.5	16.357	1	21
Osa11LNT0092500.2	osa-miR169i-5p.2	Cleavage	3.5	15.865	1	22
Osa11LNT0092500.2	osa-miR1428e-5p	Cleavage	5.0	19.597	1	22
Osa11LNT0092500.2	osa-miR1859	Cleavage	5.0	16.54	1	22
Osa11LNT0092500.2	osa-miR1862d	Cleavage	4.0	19.247	1	24
Osa11LNT0092500.2	osa-miR1862e	Cleavage	2.5	17.113	1	24
Osa11LNT0092500.2	osa-miR1320-5p	Translation	5.0	9.746	1	21
Osa11LNT0092500.2	osa-miR1428f-5p	Cleavage	5.0	19.597	1	22
Osa11LNT0092500.2	osa-miR1428g-5p	Cleavage	5.0	19.597	1	22
Osa11LNT0092500.2	osa-miR395x	Cleavage	4.5	16.92	1	21
Osa11LNT0092500.2	osa-miR3979-3p	Cleavage	4.0	9.429	1	20
Osa11LNT0092500.2	osa-miR5144-5p	Cleavage	5.0	19.688	1	21
Osa11LNT0092500.2	osa-miR5524	Translation	3.0	14.029	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0092500.2	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0092500.2	11	Tid1	Morphological trait	Dwarf	nan	nan
Osa11LNT0092500.2	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0092500.2	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0092500.2	11	fer11	Resistance or Tolerance	Cold tolerance	RM3701	RM552

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus