>Osa11LNT0092600.1

TTTAGGATTGGGTCAAAGTTTGCTGTTTGCATGATTAAGTTCCACTGATGTACAGTACAATTTCACTATTTTCTTTGATTAAAAATGAACAATGTGTCTGATCAAAACAAAGTACCTTAATGAACTTTCTCATTGTTCACAAGGATTTCTCTCCAAGTTCTTAGAAACCAGCCTATTTGCAGCATGAGTACAGTTACAAGCTCAGACTACATACGAGAACTACATCAAAGTTTTTCTACGTACAGTATTACATCCACTTTGTTGATTCCCATCACATGTTCTATGTTACCAACTTACCATCTGCTTTCCTCATTTGCTTCCCATCCATTTTTACTCCAAATATATGAGTGATGTACATGGACAACATTCTACACCAAAGAAGAAGCATCCTTATGAGCTGAAAGCTCTTGAGATTGCATATATGAAGTCCAATAAACCAGTCCCCTTGAGAAGGCCTTTCCCAGTTAAAAGTTCAAAGTCTATTAACAAGAGAAAGCCAATTATAGCGGCTTTCCCATTAATTAGTTCATTCTTATTAGTGAAACCAAAACCTCCGACATCCTCATCAATCACCATTCTCACCTCTTCGATATTGACATCGGATGCAGTAAATCCAGGTTGTGCTTTCCCACTGAATATAATCTCTGCGGATCCACCGGAGGTAACAGCCCCCTTGATACTGATGTATATATTCTCCCCATCGATTTTCACAGGGTACACGAATAGTTTTCTCAATGCAGGTGTAAGAGCCCTTAAAACAGGGTTGTTGGGATACCATTCCTTTATTTCACCAGTACGAAGATCAAATGTACTATCTGTTGTTGGGCAAACAATGCAGCCGTCCTGGGTGAGCTTGGCGTTGAGGAGGCCCTCGGTGTAGGCGCCCTCGGCGGGGGATCGATTCTCGACGGCGTACACCTGCTCCTTGTACCACAGCAGCAGGATCTCCTCCCCGTCCTGCACGATCACCCGCCGCTCCCCACGCGGCAGCGCCGCCAGCGGCACCACCGGCACCCAGTTCCCATCCCCGCTCGCCTCCCCCGCCGCCGCCGACGGCTCCGCCCCCGACACCTCCGCCGCGCGGCAACCGACGACCCTCTGGTGGTGCCGCAGGGTGGCTGTGGCTGTGGCGCGCGGGGGCGGCGAGGCGGACGCGGCGACGCGGCGGCGGTGGAGGAAGGAGGAGGCGGCTGCGGCTGCGGCGGTGGTGGTGATGGACGCCATGTGGAGAGGATGCGGAGATGGCGCGTGGTGGGGTTAGGGTTTGAGGGGGAGGAGGAGGAGGGGGAGGGGGTGGTGGAGTGGAGTGGCGCGGCCATGGCCACAGGATGGGGATAAAAGGGGAGGAGGATTTGTATTTTGTGGGGAAGAGAAGAGGACACATTTATACGCTGCTGTCCACGCGAAAACGCGCGCTCCCTCCCACGTTCAAATTCAACGCGGGAGGCGACGTGGCGAGACGAGAAGCTGGCCATGGATTCTCCTCTCTGCTCTGCAGCACTCGTGTGGAGATGATTTTCTGCTGGAATTTCCTCAGCCGCGAGAGATGTCTGCGATCCTCTCTGTGGGTGGGTGGCCGCTGAGGTGTTTTGCCTTGGAGCCGGAGGCCGTGGGCACAAGGTGTTTGAGGAAATGCCTGAGAGGGATGGATGGTATGGATGAATGAATGGCATCGCCATCTCAGCCATTCAGCCGAGCCCCACCCATCCTGGTGCCTCTGCAATGGCCGTGAAGGAATAAATTAGTCAGATTTTAGACGTGTTTGTCCCTTCGGCTGCAGCTTGGCAAAACAGGACAGGTTTGGCGTGTCCATTGACCATTGTTCAGGTGTTCTGTGCACGTCGCAGTGTTGGAGATGGAGGTGTGATGCCGGATTGCCAAT

Explanation	CPC Score
noncoding (weak)	-0.577347

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0092600.1	11	7639526	A	G
Osa11LNT0092600.1	11	7641651	A	G
Osa11LNT0092600.1	11	7641745	C	T
Osa11LNT0092600.1	11	7641813	T	C
Osa11LNT0092600.1	11	7641973	T	C
Osa11LNT0092600.1	11	7642314	G	A
Osa11LNT0092600.1	11	7641902	G	A
Osa11LNT0092600.1	11	7643001	T	C
Osa11LNT0092600.1	11	7643507	C	T
Osa11LNT0092600.1	11	7643512	G	T
Osa11LNT0092600.1	11	7641658	C	A
Osa11LNT0092600.1	11	7641869	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0092600.1	osa-miR812t	Cleavage	4.5	18.189	1	24
Osa11LNT0092600.1	osa-miR812u	Cleavage	4.5	18.189	1	24
Osa11LNT0092600.1	osa-miR5143b	Cleavage	4.5	6.762	1	24
Osa11LNT0092600.1	osa-miR5143b	Cleavage	4.0	19.254	1	24
Osa11LNT0092600.1	osa-miR5822	Cleavage	5.0	17.618	1	21
Osa11LNT0092600.1	osa-miR408-3p	Cleavage	5.0	10.606	1	21
Osa11LNT0092600.1	osa-miR419	Translation	5.0	6.263	1	21
Osa11LNT0092600.1	osa-miR529a	Cleavage	5.0	3.175	1	20
Osa11LNT0092600.1	osa-miR2104	Cleavage	4.0	15.275	1	22
Osa11LNT0092600.1	osa-miR2863b	Cleavage	4.0	14.88	1	21
Osa11LNT0092600.1	osa-miR812n-3p	Cleavage	4.5	18.189	1	24
Osa11LNT0092600.1	osa-miR5143a	Cleavage	4.5	6.762	1	24
Osa11LNT0092600.1	osa-miR5143a	Cleavage	4.0	19.254	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0092600.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0092600.1	11	Tid1	Morphological trait	Dwarf	nan	nan
Osa11LNT0092600.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0092600.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0092600.1	11	fer11	Resistance or Tolerance	Cold tolerance	RM3701	RM552

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus