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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0093300.1

CACGAATAAATTCAGGCTAAAAGAGTTAAATACTTACATTAGGGCTAGGTAGGCCAACAACTATCAGAGAATAACAGCGGAAGACAATAATAATATAAGGGCCCGGTTAACATGCCACAGGCAGTCGACTGGGGAACGAGACCTAGAACAAGACCACACTCCGATCATCTTGTTAGGTACGCAAGCGTACTAACAAGGGCTTTTCTTCAACACACTCCTAAAAGATATATAAATAGCATGGGTGAGTACCAACCGTACTCAGCAAGCCACTACAACAACAATGCGTATGAGAGAGGGTATTTCAAGGAATGGCTTCAAGTTCTTTTGCGTAAAGCAGGTTTTGCAAATCTTTTCACAAGCCTAAGACCTAGCATAGACTGATCAAA

Coding Potentia
Explanation CPC Score
noncoding -1.25515
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0093300.1 11 8202885 A G
Osa11LNT0093300.1 11 8202990 G C
Osa11LNT0093300.1 11 8203127 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0093300.1 osa-miR5816 Translation 5.0 15.481 1 24
Osa11LNT0093300.1 osa-miR166a-5p Cleavage 4.5 16.455 1 21
Osa11LNT0093300.1 osa-miR166e-5p Cleavage 4.5 16.455 1 21
Osa11LNT0093300.1 osa-miR166l-5p Cleavage 4.5 16.455 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0093300.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0093300.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0093300.1 11 nan Morphological trait Seed RM332 RM229
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus