>Osa11LNT0093500.3

AAAGATAGGTGCACCTTGTCTGCAAAAAATATTTTCCCAGTAATGTCGATTTGAGCAAATTTTTCAGCAATCCAGTTGAGCACATTATGTTAGTCATGCTCCTCTTTGAATTTATTTTACCTAACTTCTGATTTGACACCTGGCGTACAGTACAACCGTGAACAGTAGAAGATTAAATCCAGTTGACAACGAAAGCTTAGCTAGCACTACTTTCAGCGAAGCACACATAAAGCATCGATCATATCCATATCATATCCCTCCATCGATCACAGGCTCACATCTCGTCTTTAACCACTCTGTTACTTGCAGCAGCATTGCGTGCTCCTGATTTGACAGGGTAAGAAGCCTCCATCGCGATGCCACACAGCCCATTCGAGTCTGACGACACACCACGCTGCATTCTGATGTACCCTCTCTCGCCCCAATCCTCGCCCCACGAGTTCTTGACGATCCAGTACTTGGTGCCGTCTCGAGTTATACCGTAACCGACAGCGGCAACACCATGGTCGAGATCCGTGCCGCATTCTCCGGTGAAGACACCCTCCGAATAGAACTGGAAATCTTGGCCGCTAGCCTCTACTGCAACAGCCACAGGCTGGTTTGCGACTGCTTTCTGTAGAGCCGACTCGTCATTGGCAGGAACGTCCTCGTAGCCATCAATCGTTACATCGTGAGAGCTTGCCTTTGCCTTGTTACACCTCCCCTGCTCCGCTCTATATGGGTAGTTGGACTCGGTGGTGATCCCTCCGTTCCTCTTGATGAACTGGAACGCGTAATCCATGAGCCCGCCGTCGCAGCCCTGGTTATCACCGGTGTCGCAGTCCACCAGCTCCTGCTCCGACAGCGTCACCAACCTCCCCGTCTTGATCTTGTTCACTCCCTCCACCGCCGCCACCGTCGAGAACGCCCAGCAGCTCCCTTAAAATCACACCAATAAGAGCCGAGTGACTAGCACACACGTGCACGAAGTAAATGGGACATTTAACTTTGTGCCACTTTTGAGATGTGGCCATTAAGGATTTGTCACTTGTTATATATGACATGTGGCTCTCATGTGTCTATGACATGTGGGTTCAGTGGCAAATCCTTTATCGCCACTCGTAAGAGTGGCAAATAGTTAATTATTTTCGAAGTAAATATAAGATCTTTTGCCATAAACTATATGCTTAATTATATGGATAGATAAAATATTCTGAGAAAAAAGTGTAGCCAACAGTAAAAAACCATTTTGAAAAAAAAATCGTATTTTCACTTATGCAAGAAATTATTTAAAAATCTAACTGAATTTAAATATATTTTGAGTTTTTGACTAAATTTAAGAATAATTAGAAAAAAATCCAAAAATTTCGTGTTAACAGGGATTCCAAAATTTCGGAAACCGAAATTTTAAATCCTGTTAGAAAATAATGTGCCGTAATAATCTAATGATTTTGCATAATTTGTACTATATCTATCCATATGTTTTTTTGACTGCATTTGGCTTTTTCCATAGAAATGTTATATGCTTTTTAGAACGAGAAAAAAATGTTCACGCTTTTTTACCGCATTGGCCTTGATCCTTGATGCCGGTGACGGCGCCGCGCTCGCGCCAGTCGACCGCGGGCGGCAGGTTGTCCTCGTCGTCTCCGCCGTACCGGAAGGAGCCCCCCTCGCCGCCGCGGCCGCCGCTCAGGCTGCGGTGGTGGCGCGCCCTGGAGCCCGCGTAGGTGCGGCGGAACTCGTCCGTCGTCATGTCGGCGAACTTGTTCAGCGCCAGCCTGAACGGCCGGCCGCCCCTCCTGTTCGCCTCGTGGATGTACCTCGCGTTCTCCACGAACACGTTGAACCGCCGGCGAGCCTCGCCGTCGTCGTTGCCAACGCCTCCTGATGCTGCCGGCCGCGACACGGTGTACCGGCTCCGCCACCGCTCGTACAGCGCCCGCAGGCTCTCCTCCGACGAGAGGTCGCTCTCCGTGAACGGGATAGCCCTCGCCGGCGCTGCCGCCGCCGCAGCCAACGCCACCGCCGCCGCCGCGACCAGGAAGCACCTCAGCATTTCGCACGGTTTTCACCACCCAGATACCGACAGCGCCAACACACAGGTCCGGGGGAATGGTAGCTATAGCACACCGACTTTATTCAGTTCAATGAGCT

Explanation	CPC Score
noncoding	-1.10577

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0093500.3	11	8379792	T	G
Osa11LNT0093500.3	11	8380884	T	C
Osa11LNT0093500.3	11	8379482	T	C
Osa11LNT0093500.3	11	8379529	T	A
Osa11LNT0093500.3	11	8380794	A	G
Osa11LNT0093500.3	11	8381989	A	G
Osa11LNT0093500.3	11	8381886	A	G
Osa11LNT0093500.3	11	8381712	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0093500.3	osa-miR166d-5p	Cleavage	5.0	14.333	1	21
Osa11LNT0093500.3	osa-miR166k-5p	Cleavage	3.5	14.333	1	21
Osa11LNT0093500.3	osa-miR1425-3p	Cleavage	5.0	20.495	1	21
Osa11LNT0093500.3	osa-miR1861n	Translation	5.0	19.573	1	22
Osa11LNT0093500.3	osa-miR2098-3p	Cleavage	3.5	19.569	1	20
Osa11LNT0093500.3	osa-miR2879	Translation	4.5	12.8	1	24
Osa11LNT0093500.3	osa-miR2920	Cleavage	5.0	13.232	1	23
Osa11LNT0093500.3	osa-miR2921	Translation	4.0	11.735	1	24
Osa11LNT0093500.3	osa-miR3982-3p	Translation	4.5	18.23	1	21
Osa11LNT0093500.3	osa-miR5505	Cleavage	5.0	24.857	1	22
Osa11LNT0093500.3	osa-miR5524	Translation	4.5	14.036	1	21
Osa11LNT0093500.3	osa-miR7694-5p	Cleavage	5.0	20.495	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0093500.3	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0093500.3	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0093500.3	11	nan	Morphological trait	Seed	RM332	RM229

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus