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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0093600.1

GCAGAAAGCCAGAAACTATGCAATATAAGAACTAGAAAAATAAACAGCTTTAATGGTCAGATACAACAATTTTGAGCCAACTCAAATACTTTTATTGAATCTTTTCTAATACAACTGACACAAACTGTGACCACTATTTTCTTATTGTATTGCTTTCGAATGATTCTATCACTTCAAGATTGTGATTCTAACAGAAGAGAACAAAATTGAATCGAAATGACAAGATGGGGATGACCTCTTTGCCAACTGACAAACAAACTACAGAGGAAGGGAAAACCCACGGAGGTATTTGGAATCGACTCCTGACTCACGGCGCAACGCAACCCTGCCAGTTCGTGCAACCTCACAAATGCCATAGGGCTCGAGCATCCTTTGTAATGCGACCATTTTATCAAGGTCTCCAGTAAGCTGAAGAGTTACGGTGTGATCTGATACATCCACAGTTTTGGCCCGGAAAATATCAGCAATATCTAGGATAGCCCTGCGGGCTGTGGTGTTTACAGCAATCTTTATGATCATTAACTCTCTAGCAGCAAATGGTAAATGAGTAAGATCCTGGACCTCATAAACATCAATGAGCTTATACAGTTGGTGTACTAGCTTGGCAATAGACTCATCAGTTCCAGGGACAACAGTAGTGATCCGAGAAGTGCCTTCTTTTTCAGCTGGGCCAACAGCCAGACTCTGAATATTGTAGCCTCTTCGGGAGAAAACACCTGTTACAACATTGAGAACTCCAGGGAAATCATTCACCAAAATGGACAAAGAATGTGAACAAAGCCCTGTTGGATCACCGTCAGCCATGACACCCCAATGAGCATCAAGAATTTGATTTGTTGTGAAGTTTTCATATGACTCCACTGGATAGACATCACCTTGTGAAGATTCTTCAGAATTCTGGTTAGCTGTTTTCATCGCAGTGTTGACATGAGATTTTGATGGCATTGCCACTTCAAGATCAGGATAGGAAGCTGCAGAGAACCGCCAAAAAGGAGCACTTTCTCCCATTTTCTCACGCCGCAAAGCTATCTTGCCAGTTCTGGCAATTTCTTTGATTCCAAATTTGCTTAGGTTCCTCTGTACAGCAACAATTTTTCCAGGATCTCCAGTTACCTCAATAGTTAGTGTGTGGTCAGAAAGGTCAACCACCTTTGCTCTGAAGATGTCAACCAAACCCATCACCTCCGGTCGCTTATCTGGCTCAACATTTAGTTTTATAAGCATTAGCTCTCTTTCAACTTGTGGTTCCTTCGACAGATCGTCAACCTGTATAACATTAACAAGTTTGTTTAGTTGCTCTACAACCTGTTTCAGTATTTTCTCAGTTCCAGATACTACTATTGTAAATAATGCCTTGTCCTTGTTCAGCCCAACTGCCAATGACTCAATGTTGTATCCTCTTCTAGCAAAAACTCCAGCAATTCGATTAATCATCCCACTTTCATCTCCAACAAAAACTGATAGTGTATGACGCTTTATAATCGAGCCCCTGGGGCTTGGCGGAACCGGCGCGACGCCGCCGGTGGCCGGAGAGGGAGCGGCGGCGCCGGCGGCGGCAACGACGGCCGCGGGGCGCGACCTCGGCCTCGCGCCCCCGCAGACTGCCACCGTCGTCGGGCGGTGGCGCCGGGCGCGAGCGGGTTCAGCGCCGGCCACCGCGAGGCGGGAGGCGGCGGTGGCGGTAGCCATGATTGGGAGCGGAGGGAGGGAGGGAGAGATCGAGGAAGGAG

Coding Potentia
Explanation CPC Score
noncoding -1.05408
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0093600.1 11 8418165 T A
Osa11LNT0093600.1 11 8418458 A G
Osa11LNT0093600.1 11 8418631 A C
Osa11LNT0093600.1 11 8419629 T C
Osa11LNT0093600.1 11 8419843 A G
Osa11LNT0093600.1 11 8420162 C A
Osa11LNT0093600.1 11 8420269 A T
Osa11LNT0093600.1 11 8420486 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0093600.1 osa-miR5534b Cleavage 5.0 17.441 1 21
Osa11LNT0093600.1 osa-miR1440b Cleavage 4.0 8.649 1 21
Osa11LNT0093600.1 osa-miR171d-5p Cleavage 4.5 17.506 1 21
Osa11LNT0093600.1 osa-miR171e-5p Cleavage 5.0 17.506 1 21
Osa11LNT0093600.1 osa-miR814a Cleavage 5.0 11.379 1 22
Osa11LNT0093600.1 osa-miR814b Cleavage 5.0 11.379 1 22
Osa11LNT0093600.1 osa-miR814c Cleavage 5.0 11.379 1 22
Osa11LNT0093600.1 osa-miR1439 Translation 4.5 9.258 1 21
Osa11LNT0093600.1 osa-miR2095-5p Cleavage 5.0 12.45 1 22
Osa11LNT0093600.1 osa-miR5161 Translation 4.5 9.414 1 20
Osa11LNT0093600.1 osa-miR390-3p Cleavage 5.0 20.304 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0093600.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0093600.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0093600.1 11 nan Morphological trait Seed RM332 RM229
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus