>Osa11LNT0093700.1

GATCCTCAAGAATCAATGATAAAAATGTGAAACACCATTAAAATACGCATTGAAACATTTCGATTTAACACAGAGAAACATTGAGAAACATCAATGGATCCTCAAGAATCGATGATAAAAATGTGAAACACTACTAAAATACGCAGTGAAACATTTCGATTTAACACAGAGAAACATTGAGACAAAATAGACTGGAACATTGAAAAATCACATTAGTTTACCCCATTCTAGATTTGGCTTCTTCCTCCATCCCGGTGGCCAAAATCTTCAACGGTGCCGGAATGCCGTGCTCCCTCGGCCACGGCCTCGGCCACCACCACGACTACGAATTCCGCCGGCGTGGCCTCCTCCCCATAGCCTCCGCGGCGGCAATGCTCCTGCTCCTCGCACTTCTCATCCCTCTCCCTCCACCACCTCCGCGCCACGGCCGCCTTCGTCGACTCCGGCGACCCGCCCACCACGCTCCATCTCGCCGTTGTCCAGTTGTCTCTGCGCAGGTCCGCGCGAGAGGCCCCACCGAGTGGCCGGCGGCAGCGAGGAGGAGGGCACCACGACGGCCGCGGCCATGGGCGGCGCGGCGGACGCAAGGCCGTCGTCGTCCGGTGAGGACGCCGTCTCCTGCTTCAGTATCTCCATTGACATGAGAGAGAGAAGGGGGAAGGGGAAGAGATAAGGTTGGAGCGGTCGAGCGGAGTGTTGCGAGTCACCGGCGGCGCCAAAATCCGGCCACCCACGACGGCAGCCCCGCCGTCTGCGGCGGTGGCGGCGCCGGCGCCGGCGCCTGATGACACCGCGGCCACGTGTGTAGCATGGGACGCCGTGAAGAAGTTGAACACTTGAACGAGAGGTTGGGGATGAGAAGGAATGAGGATAAGATTG

Explanation	CPC Score
noncoding	-1.07488

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0093700.1	osa-miR5821	Cleavage	5.0	15.942	1	21
Osa11LNT0093700.1	osa-miR3980a-3p	Cleavage	5.0	22.358	1	21
Osa11LNT0093700.1	osa-miR3980b-3p	Cleavage	5.0	22.358	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0093700.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0093700.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0093700.1	11	nan	Morphological trait	Seed	RM332	RM229

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus