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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0094100.1

GGTAATAACTTCATGTCCATGAACTGCTCTGGTATTAACAGACTTCCAGCATCAGGATGCAGTTCTAAGTTATTCCAGGAAAAATAATACACCAAAGTTTTTTTTTTAAAAAAAAATACAAGTACAAAAATGCTTGACATAGCAGCTGCTGTAAGAAAATTTTTAACTTGGCATAGACAATGCATATACAAGTGTTGCAAAAGAACCACTCTACAACATGCAGGTCTTCTTGTTCTAGTGTTTCCACCCTCTCGAGAAGCCCTCTGGACTATACGGCTCCAAGAATCCAATAAACTTCGAGCCATCTTGAGACCATCTGGCACCATAACCTTCATGCACACGGATTTCATAAACAGGACCATAGGGTTGAGTAAGATGAATATTCATCCAACAGCATTCACGTAACAAGTGGTCAATGATTTCGGATGCAAGTTGGTTTTTCTTTACATCTGAAGATAAATAAATGGAACAGTGAACTATATGGCCATAATGCTAGTCTCCAACTGGATGAGAATTAAGCTAGGACGTATCTTTACCACTTCCGTGGAAGCTGCCCCACCATCCATCGCTACTCATTTGGTTGATGTAGCTTCATGCAAGAAGATATCAGTACAGATCTTGGAGGAGGTAGTCCATCTTGAACTGTACCTGCAGTTTTCACCATACCAAGGAGTCTACCCAATCCATCAGAACCCAAGCCAGCAAGAAGCTCTGTCATGATTATGTAAGGTTGAGCAGTTGGCTTTGAAACAGAGATTGCCAAGACTCCATAAAAGCTTTCCTTTTCTTCCGTATAGAATTTCCTATATACTCCCACTCCTTGTTCAATTGATGAAATACCAGGAAGAACCTCTGAGATCATCTCTGCCTGCAGCATCTCTGAAAATGAGGCATATTTTCTAATCGCCTGAACATTAAGCAAGAGACACTTATTGAAAAGAAGCAAAGAACCTTCTGCAATCCGGTTGTAATTACCAGCTGCCAACCTCCCTTCAACTTTTTTGGTTCCAGCTCTTAGTTGAGTGAAGTATGGTTCTTGAACATGCAACTCAAACTCCACAGCATCATACATCCTCTTCAACTCGTTCCCCTTCTCCAGCACCACCGCCTCCCACTCCCTCTCCCTCTCCTCCGACCACGCCTCGCCCGCCGGGATCCCCGCCTCCGCCGCCGCCGCGGCCACCGGGAGCCGCCCCTCCTCGACGCACCGGGCAAGACCGGCCGCCAGCTTCTCGAGCAGGTCGTCGTCGTCGTCGTCGAGGAGGAGGCGGGAGCAGTAGGAAGGGGAGAGCGGGAGGGCCGGGTCAGGCGCGGCGAGGTGGGAGGACAGGACGAAGCGGAGGAGGCCGAGGAGCGCCGGCGCGAGCGGCACCGCGCCGCCGGTGCCCGGCGACGGCGGCGGCGGGGTCTCCGACGAAGCCATTTCCGTGCTGTGGGGGCAACGGAGTGTGCGTTGACTTTTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.991245
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0094100.1 11 9080229 A C
Osa11LNT0094100.1 11 9079266 G A
Osa11LNT0094100.1 11 9084275 T C
Osa11LNT0094100.1 11 9079704 G A
Osa11LNT0094100.1 11 9079760 T C
Osa11LNT0094100.1 11 9079966 C G
Osa11LNT0094100.1 11 9080284 G A
Osa11LNT0094100.1 11 9080529 C T
Osa11LNT0094100.1 11 9080954 T G
Osa11LNT0094100.1 11 9081596 A T
Osa11LNT0094100.1 11 9081597 T A
Osa11LNT0094100.1 11 9081750 T C
Osa11LNT0094100.1 11 9081838 A T
Osa11LNT0094100.1 11 9081901 A G
Osa11LNT0094100.1 11 9081975 A T
Osa11LNT0094100.1 11 9082294 T A
Osa11LNT0094100.1 11 9082935 A G
Osa11LNT0094100.1 11 9083057 A G
Osa11LNT0094100.1 11 9083074 A G
Osa11LNT0094100.1 11 9083161 T C
Osa11LNT0094100.1 11 9083575 A G
Osa11LNT0094100.1 11 9083587 T C
Osa11LNT0094100.1 11 9083659 A G
Osa11LNT0094100.1 11 9084087 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0094100.1 osa-miR444a-3p.2 Cleavage 4.0 14.414 1 21
Osa11LNT0094100.1 osa-miR444b.2 Cleavage 3.5 14.414 1 21
Osa11LNT0094100.1 osa-miR444c.2 Cleavage 3.5 14.414 1 21
Osa11LNT0094100.1 osa-miR444d.2 Cleavage 4.0 14.414 1 21
Osa11LNT0094100.1 osa-miR444e Cleavage 4.0 14.414 1 21
Osa11LNT0094100.1 osa-miR1858a Translation 3.0 4.194 1 21
Osa11LNT0094100.1 osa-miR1858b Translation 3.0 4.194 1 21
Osa11LNT0094100.1 osa-miR2118l Cleavage 4.5 22.147 1 22
Osa11LNT0094100.1 osa-miR167d-3p Cleavage 4.5 9.397 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0094100.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0094100.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0094100.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus