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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0094200.1

GCGTGGGAAACTGCACAATATATTATGAATATAATTGTTTGAGATGTTTGCTCTGCACATGAATGATGCATGTAAAGAAGAGAGAAAAAAATAGAATATTCTAAGGGATGCATGGATGCAATGCATTTGCATCCTGCACTCTTGCATGTATATAGATTGTAGGGCAATGGGCCAATGGCACTTGAAATGCATGCATTTCCTTTCGATGTGTAACATCCTAGCAAATACCATAGGATGATTCACAGGTATCCATATTCCCTTCTTTTGCATCAACCGTTGCACAGTTTGCAAAATGGCGATTTCTTGTTGGGACAAACAACAGGGACAAAGTTTGCTTTGCTCATCAAGGAGAGCCATCAGTTTTAAGCTGATCATCTCCACTTGTTTCCTCTTATGAGTTATGACAGCAACAACTTTTTTACATTTCACGCACAAGGACACAGCCTTCGGGTATGTTGATGTGAACCATCACATGTGAGCCGCTCATCCATCTGCATGTACAAGCATGCTCCTGGATTCAAATTGCTTGGAGCCTCATCTACAACTTGAGCAGGTTGATCTGGTCCAAGATTGCTGAAACAACCACTTTTGCATCTCATATATTTCTGCAAAATCTCACATTTGTTCAGAACAGAAAGCCTGCTTGGAACACATGATTGTCCTTTTGCTCTGCACACAGAACTACAAGATTCGCCCCTCCTTCCTATGCTGATGTTAATGCCATCCAGCCTTGGTCCAGAACCAGAATCAGCTGATCCTGAAGAATTCTGCTGCAGCAAGAAGCAATGATGGAAGTCACTTGCATACGCATTTTCATGTACCACACTTGCAGAACTATGGCGGCATCTTCCCATGCAGAAATCGAAGACATTTCTGTAAGTTCCAGAAGTAACTGGTCTAGCTACCTTCAACTTCAGCACATCTGTTTCCTTGGTTCTTGAAGGATTTAAGCAGCAAGAAACACAATATTCATAAGAATCACAGCACTGTAAATCGAGTTTGCAACCCTGACAGGAAAAACGTGACCCTGTTCTTGGGCAACACCGAGACCATGGATCGATAGATAAGGAAGAACATACATAACCATTATCATCTGATATCAGGTGCCGCCCTTGCACAGTGCTCCTGCACATGATGGGTGCTGCAAGACCAATGTCCTTCCGTATGCCGGCGACGAGGCCGGGGAGGCAGGCGAAGAAGGCGGCGCATACGATCCGAGGGAGGAGGTGGAGGAGGGGGAGGGCGGTGGTCGCCATCTCCGTCTTGGTCGAGGAGATCGGGTGCAGAGGAGGACGCAGGACGCCAAGGAAACCTACAAGGGTTTTGA

Coding Potentia
Explanation CPC Score
noncoding -1.16711
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0094200.1 11 9178744 A T
Osa11LNT0094200.1 11 9178780 A G
Osa11LNT0094200.1 11 9178908 A G
Osa11LNT0094200.1 11 9178919 G C
Osa11LNT0094200.1 11 9179019 G A
Osa11LNT0094200.1 11 9179325 A G
Osa11LNT0094200.1 11 9180633 T A
Osa11LNT0094200.1 11 9181104 G A
Osa11LNT0094200.1 11 9181450 A C
Osa11LNT0094200.1 11 9181913 A C
Osa11LNT0094200.1 11 9182344 T C
Osa11LNT0094200.1 11 9182678 A G
Osa11LNT0094200.1 11 9182693 C T
Osa11LNT0094200.1 11 9183531 A G
Osa11LNT0094200.1 11 9183734 A C
Osa11LNT0094200.1 11 9184089 T G
Osa11LNT0094200.1 11 9180977 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0094200.1 osa-miR1866-5p Cleavage 4.0 11.612 1 24
Osa11LNT0094200.1 osa-miR2878-3p Cleavage 5.0 17.357 1 24
Osa11LNT0094200.1 osa-miR2928 Translation 4.5 16.355 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0094200.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0094200.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0094200.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus