© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0007900.1
TGCACGACGAGCCCACTAGAAGATCGCGCAGCCCACCTTGGGCGCGCCACATCTCTGACATCACGGCCCGGTACTTCATTCCGCCTCGGTCCAAATTTCCCCAAATCAACCGAAGGATGGGCCGGTCCGCCTGCCTGCCTGGGCCGTTAATTACACATTTACACTAGCAAACGTGCTTGAAAAAACATTAGCATCACGGTGATTGGATTGTTGCTGCAAATTCGAGAGACAGAACGGCTTCAATTCTGTCTATATCTATATCATTAACTCCTACGCGAGCTCCTCCTGAGGAAGGAGCCGGACTTGGCGATCACACGCAGCGTCTTGTCGGTGAAGCGGAGCAGGTTGTAGGCCCACGCGCCGCACACCGCCCCGCTCACCGGCGCCGCCACGTACACCCACACGCCGCCGTACCTCCCCGCCACCATCGCCGGACCAAGGCTCCGAGCCGGGTTCATCGACGCCCCCGTCACCGGCCCTGCGAAGAGCACGTTCACCGCGACCGTCGCACCGACAGCGAGCCCAGCCAATTCACCGATTGCTCTGTTGTCCGTGGCGACGCTGGAGACGACGAACATGAGGAAGAAAGAGATGACGAACTCCAGCGCCGCCGCCTGCGCCATCGACCCCGCCGGCGTCGTCCCCAAGAACAAGTGCTCCCCCCGCGCGCTGCCGCCGCCGCCGAACACCACGCGCAGCGTCAGGCTTGCCATGGTGGATCCCAGCACCTGGGCCACCACGTACGATGGCACCTGCACCCCCACACACACACATTGATCACCACAAATGAGTTATTGGCAGTAAATTTAACCGAAACATAATCCGATCCATCGTTTGCTCCACGGCTGATAAGCCCTGCTTCCACGGGAAGCATCCTTACGTGGCGAAGGCGACGGTAACGGCGGGGTTGAGGTGGGTGCCGGAGATGTGGCCGACGGAGTAGACCAGCACCGTGACGACGAGCCCCCACACGACGCAGATCCCCGGGAACATCACCGCGCCGCCGGTGCTCAGGTTCACCACCACCGCGCCGCACCCGGCAAATATCATGAAATATGTCCCCAGAATTTCCGTAAGAATCTTCTGCATGAATTGGACGGAGATCATGTCGTTGCCTTGGCATCTTCTGCTGGTGTTGCTTCCATCCTCTGAATTCTCACACTTCACCTCCTTGCTGTCTTGCCCTTCTTCCATGGCTCCTGCTGCTGCTCCATCCTCTCTCCCAGCCATCTCTCTCCCTGACTCAATTGCAAAGCTATCTGTTTGAGAATTGGGAGTACAAAGATAGTGAAAGACTAGTCCAGGCCAGCAGCATTATGTGCTGGTATTTTTATAGCACTATGCAGCAGCAGCAGCATCATCTTCTTGGATTGACCACCTACTCTACATGAGTGTTGATGCAGGCAGCCGTGCGCAAAGACGAAACCCATCTTCAACCTACAGCTTACTCCTCCTCAACAGCTCAGGAAAAACATGTCCAAGTTTAAGCATTATTTGGACTATAACTTGTACAGCCCAGCTCCCATGTTGCGAGTTGCTGAAGCATTTCCACTCTTACTTCCGAAAGAAACACAAGAGTACACTGGCATGGAGGTGCCGTCCCCTGTGGTGTCACTCGGCATCAGGATATGCTTGGCCCCAGGAGTGAGCTTCATCGGACCAGTTCTTCGCGCATGCCGGCCACCAGAGGAAGAGCTAGGCATTTCAGGAATGGCAGCTCTTGCAGCAACATTTTCTGCATTTCTAGATGGACATGCTGCATCTCTTCTGCTGCCAGAAGCTTCTTCAACTATCCGTCTTGGACGAGTGAATGTAAAGCTTGGAGAGTTGTGGGGGTGAACCGACGATCCAGCTGAGACCACACCATATGACCGAGGCAAATTAGCATGATAAACTGAAGATGGTGTCACATGCTGTGCCGTCGTAGGCAAAATTGGTGCTGAGGGTGATGCAGTACTGGATGAAGAAGGATCAGAGTAACGGCTCCAAACATACGGCAAATTCTGACGGAGCGCTGCACTGCCATGACTTGTAAGTGATGGACTCCCCAGCAGAACATTTCCATGGTGCTGTGAGCCTGACAAGTAGCTGAACCGATCGTCGTATTGCAATCGATCTCCAGATAATGCATTGGCCATGGGGAATGAGTGGCTCAAATTCTGTGGGGCAGTGTACCTGATATGTGATTGACTTGGGCTTGCAGAATTTGCTGAAACATTGGGCACACTTTGAGCTTGTAAAGAGAGATAAGGCCGTCCTTGTCGCGGCAATTCCAAGAACAACTTTGTGGGATGGTCTTCAGTATAGGAATGTGTCCCAGACACATACTCTCCTCTGGTTGTAGATACTGCAAGATCTTTGCCCATTAGACGCACAGTTTGTCCTGGAGCAGGCCTACACCCCTGCTGCACACCCATTTCAGCATGAGAACTTGAAGCCGCTCCGGCAGATGCATTACAGTCTTGGGGAGGAACTTCCCCTTCATTGGAGGGCTGACTGCCTCCAAGATTCAGATTGAAGGCATAATACCTCTGGTGCTGCTGAAATGAGTCCTGAACTGTATGATTGGGCAATGCACAAGGTGACTTCCCCTTTGTCATAGCATCTTTAACCGAACCACTACTACAATCACCATGAGACTCAGCAAGTTCTGTCAACTTCCGTGAAGAACCAACAAAAAATGTGTCAGACACTTCCATGAACTCACCGTGCAAAAATGTGCCTGGCGATATTGAACTTCTAGCTCTTTCTAACCCAGACTCAGGAACGGACTGACATTGAAGTCCATGTGAATCCAAAGACAGATCCTGCTGGTTTTGTCCTCCTTCGTCAATAACTTGCACATCAGAGTCTAAAGGCTCATGCTGTCTAGGCTCATGATTTGGCTCCTCTGGATTTGACACATATGGGTAGTTCAAATCAGTAGATTCTGGCAGTGCCTCATTCAGATCAAACAAATTGGAGGACAACTGTGTGCTGGTGAGCTCAAGAGAATCCTCATGATCTGTACTCTTGCTTGCTTCTTTAGTTGCTGTCTCCGGCATATGAGAACTACAGCTTTCTGCAGCTATGTGCTTGTCCCCTTCACTGGACATGTCCGTGGATGATGACGACGATGACGCCAAAGCATCCGAGAACAGCTTGCAGATATTTTGCTTGTTAATACCAAGCACATCATTAACTTCTGAGAATTTTACACGCTTCACTGATTTGCGGCAGACTTCAATGACTTCTGTGCCTTTTGGGTCGCCATGTTTCTCCTTGACCATTTTGACGGATGTGTGCTTTGTGTATTTCTTCAGAATACTATGCAAAGGGAGCATTTTCTTCAGGTCATGCTGTTTCCCCACCTTATTGGTAGCCCTTTTACTCTCGCTGTACCTTTTCTTATCAATCTTCTTGTTGTTGTTCTTATCTAAGTTAGTGATCTTTACCTTCTTCCTTCTCTTTGAGTCTGGAGACCTTTCCTCGTCTGTTCTTGCATGGTGTACACCATCAGGTCTCCTTGACGCTTGAGGAGTATCCAATCCACCAGGCAAATTTGTCTTGTCATGTGCTTCCTTTCTGGTGAAGTTTCCCTCGGAATCACGCGTCTCCGCCGCCGCCGCCGCCGCCGCCACCGGAGCAGAAGCAGCCCCCGCCGCCTCCTCCTGCAGCCTCCGCTTCCGCTTCTTCTCCCTAGCTCGCCGCATGATCGCGCAGAGCGCCTCGTCGTCGTCGTCATCGTCGTTCCCGCCGCCGCCCGAATCGGAGGAGGGAAGCGCGAGGGGAGGCGCCGCCGCGAACAGATCCGATATGGACCGCTTCTTCGGCGCCCTCGCCTTCCCCAGCGTCCTCCTCGACGGCTTCGTCGGCGGCGGCGGCGGCGGGGACGGGGACGGGGACGGCGACCGGGGAGGAAGGGGCGGCGCCGCGGCCAGCTCGTCCGCCCACCACCGGAACCTCCTCGCCTCCATCGGCGGCAGATCCCCAGCGCCGAGGCCGTACAGCCTCCTCCCCTCCGCCCCCGCCGCTCCCCTCATGCTCGCCGTGTACTCCCTGATGGAGAAACCGGCGACGACCGCCATGGATGCGCTCCGCTCCGCTCCGGCCGCCGCGAATCTACCCGCGCCGCGATTGAGGGGGAGGAGAGAGAGGGGGGGCAGAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0007900.1 | 1 | 5591755 | T | C |
| Osa01LNT0007900.1 | 1 | 5592893 | A | G |
| Osa01LNT0007900.1 | 1 | 5593464 | G | A |
| Osa01LNT0007900.1 | 1 | 5594248 | G | C |
| Osa01LNT0007900.1 | 1 | 5594605 | T | C |
| Osa01LNT0007900.1 | 1 | 5595377 | C | T |
| Osa01LNT0007900.1 | 1 | 5596880 | T | C |
| Osa01LNT0007900.1 | 1 | 5597159 | A | G |
| Osa01LNT0007900.1 | 1 | 5597169 | A | G |
| Osa01LNT0007900.1 | 1 | 5597459 | A | G |
| Osa01LNT0007900.1 | 1 | 5597489 | C | A |
| Osa01LNT0007900.1 | 1 | 5592664 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0007900.1 | osa-miR5534a | Cleavage | 5.0 | 6.337 | 1 | 21 |
| Osa01LNT0007900.1 | osa-miR2873c | Translation | 5.0 | 16.592 | 1 | 21 |
| Osa01LNT0007900.1 | osa-miR5836 | Cleavage | 5.0 | 23.717 | 1 | 21 |
| Osa01LNT0007900.1 | osa-miR5079b | Cleavage | 3.5 | 16.677 | 1 | 22 |
| Osa01LNT0007900.1 | osa-miR810b.1 | Translation | 5.0 | 16.361 | 1 | 21 |
| Osa01LNT0007900.1 | osa-miR1866-5p | Cleavage | 4.0 | 12.994 | 1 | 24 |
| Osa01LNT0007900.1 | osa-miR812g | Translation | 4.5 | 17.531 | 1 | 24 |
| Osa01LNT0007900.1 | osa-miR812h | Translation | 4.5 | 17.531 | 1 | 24 |
| Osa01LNT0007900.1 | osa-miR812i | Translation | 4.5 | 17.531 | 1 | 24 |
| Osa01LNT0007900.1 | osa-miR812j | Translation | 4.5 | 17.531 | 1 | 24 |
| Osa01LNT0007900.1 | osa-miR2876-3p | Cleavage | 4.5 | 23.081 | 1 | 21 |
| Osa01LNT0007900.1 | osa-miR5073 | Translation | 4.0 | 18.289 | 1 | 23 |
| Osa01LNT0007900.1 | osa-miR5079a | Cleavage | 3.5 | 16.677 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0007900.1 | 1 | dn1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0007900.1 | 1 | sp1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0007900.1 | 1 | qTNSP-1-1 | Morphological trait | Panicle/flower | RM1 | RG532 |
| Osa01LNT0007900.1 | 1 | gn1 | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0007900.1 | 1 | gp1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0007900.1 | 1 | gw1a | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0007900.1 | 1 | qLS1-2 | Morphological trait | Shoot/Seedling | G359 | RG532 |
| Osa01LNT0007900.1 | 1 | qSS1-2 | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0007900.1 | 1 | qSSB1-1 | Morphological trait | Panicle/flower | RG532 | G359 |
| Osa01LNT0007900.1 | 1 | qSW1-3 | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0007900.1 | 1 | qFLL-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0007900.1 | 1 | qFLP-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0007900.1 | 1 | nan | Resistance or Tolerance | Lodging resistance | R1944 | C955 |
| Osa01LNT0007900.1 | 1 | ph1.1 | Morphological trait | Dwarf | RM220 | RM272 |
| Osa01LNT0007900.1 | 1 | qSTS-1 | Others | Others | RM151 | RG532 |
| Osa01LNT0007900.1 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0007900.1 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0007900.1 | 1 | Rf3 | Physiological trait | Sterility | nan | nan |
| Osa01LNT0007900.1 | 1 | ppp1.1 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0007900.1 | 1 | prg1.2 | Physiological trait | Source activity | RG140 | RM243 |
| Osa01LNT0007900.1 | 1 | spp1.2 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0007900.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0007900.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0007900.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0007900.1 | 1 | qHUS-1-1 | Others | Others | RM151 | RM3746 |
| Osa01LNT0007900.1 | 1 | nan | Physiological trait | Source activity | RG532 | RG472 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)