>Osa11LNT0094300.1

GTTGAGAGAGTTATTCTATTAATTTTTTGCGAGCATAAACAAAGAAAAAAATAAAAAATTTGATACAATATAGGATATACCATGTAGGTAATAATTACCCTAATGTTGTACATTTGCGATACACTTAAGAAAATTTCGTGCGCCGCTAAAAATTATTCAGATAAATGTCAAATTTCCATCAAGAAATTTCTGCCACGAGTTCACGTGTAATGAACCTGCTAATCTCTATTGGCGTCTCCAGTTCGTGCCAATGTATGGAGCAAACTTCAGTAAAGAAACTATCGACAAAAAGCTTGAGCGTCTAGCAAAATTTGCACTCAGGTGGTCTTCCCTTAGATTCTCAAACTTTCATGTAATCCCCTCCAGCGATTTCTCTCTGACTGAAAACCATATGAACATAATTAGGCTTGCCATATAATCCACGATGCAAGTTTTCATCAACATGATATACTAATGTTAGGAATTTGTCGTATATTTGGACACGATATCTTATAGTTCCAAAGGATCTTTAACTGCTTTTTGAGGACCAGAGAGTCTTTTGTTAGCATTGATTCTATCTGTATTTGAGTGCATGTCTTTAAATCACATAGCAGAAACACTTTTAAGGAAATCTGTCTCCACTATAGCATTATCACCACCAAGTGCAGCGAAATGATTCAACTCATCTTGACAGACAGTAGCAACAGCCAGATAGGATGCATAGGAGTGGGCAGTGATGGTGGAGACCTGAATAATTTGGCAAAACCTGAATGTAATTACTAAAAATCGGCCCCAAAAATCCAAAATTGGCAAAACAATACTTACCACTGGAAATCCCTGCTGGCAGCCGCTGGAGTTTTTACAATCATATATCTTATATAACTGCTAAAAATTTTCACATATAATGCTAAGTTGCTAATTAAACTCAAGCTCTAAATGCATTTTCACATATAATGCTAAATTGCTAACTAAAATCAAGCTCTAAATTCATTTCTATGCTTTCTGATAGAAACTTGCAGATTAGCGTGCAACTTATCTTGATGCCTATTTTCGGTTCAATTAAGAACGAGAAGGAATGCGCTCACCACAAGAAACGAGCACTGACATAGATGCGGTGTGGCGTTGAGGAAGGCCGTTGATGCCATGGCTTGGAACAACGGGAGAAGGCAGCGGCGACAGCAGATGCAGTGGGGGGAGGAGGCGGCCGGCGCGGTGGATGGGTTGGAGTAGCACACAGTTAAGGTTGCACTCCAATTATAATAAGAAGATCAACATCCAATTTTGTAAGAATGTTGTACCTAAAATGTTAACTCATATATCCTGTCAGAAGAAATTAATTTAGAACAGCACATTCAACACGTGTGTGTCTTTGTTGTTTAGCTGTAACTTCACACTTGGAAACAATAACTGAGTCCATTGTTCCCTCAATTTTAACACTTTGATTAGTCACTTTTTGGTCAGTGAACAGTGATGCCGTTAGAGGTGGCATATAGTTAACGTTGAAGTTGAAGCACTTAGGATAGAAATCTTGAAAGAAGGAATGACACTGCAGTAAATAGCACATGTGAAAAGGCTAGATTAAGATGAGGGGAAGAGATCAAAATACATATCCAGTACAAAGCCCAGACCTAAATTGAACAATGTCAAGTGGCTTAATAGTAACATTTGACAAACAATTGCCGCAAATTGCATAATTTAAATGTAAATGAAAGCTTTAAAAAATACGCAGTTGAGATGCAATGCTGACAAAATGCAGTATCACCTTAGACTTATCAGTTCTTCACGAGTAGGCATCACTCCCCTGTGATTTAGCTGAGGATCAAGAACGGACCACGAGGTCGACCATCGCTGCCAGAAGATGCCGACGACGAATCGACGACTCAAGTGGGGTTTTCTGGTGTCGCTACGGGCCAGCGGTCATGGAGGAACGGCGGCGCCCGGCACTTAAGACGACGATGTGGGGACGGGAAACGGATTTGATGGGTCATCGTGTGACCACCTCACGATGACGAAGCAGAATGGGAATGGACGAGATGACGGAGAGGCGTCACCCTTGACACGATGCCCTTGATATGACGCGGGGAGGCGGCGATCTGCTGGCGGAAGAACAACGGTGGTCGGTGCCTGAGATGACGACGTGGTGGGGACGGGAATCGGCGCGATGGAGGGAGGAGGGGATCTCATTCGACGGCGGTGGTGCTTGAGGGTGGTGGAAGCGGCGGCAGGTCAGGGAGGCACGGCGAGGAGGAGGAGGACGACGACGACGACGAGGGGCTAGGGTTTCCGCTCCTGTATCCTCTGTTTCCATGGATGGAGGCGGTGGCGTTTTGGGGAGAGCGAGGGGGGCGGGAGGCGAGGAGACAGGCGGAGGTAGGTGCCGCAGGCGGTGCAGGGCGGCGCCGATGGTGGGGCACGACGGCAGGCGGTGCAGGGCGGCGCCGATGGTGTGGTGCCGCGTGGATTGAGGAGGCGGACCGGCGGAGGGGATTCGCGACGAGGAGGATGAGTCGTGGCGAGGGGGGGCGGCGCGAGCTTTTTTTTTTTTTCCCGCTGATTGTGGATCGCGATCCGTAGGAATCGCGCGTGGGTGTTGCGGAG

Explanation	CPC Score
noncoding	-1.17823

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0094300.1	11	9463816	C	T
Osa11LNT0094300.1	11	9464928	T	G
Osa11LNT0094300.1	11	9465696	T	C
Osa11LNT0094300.1	11	9465963	C	G
Osa11LNT0094300.1	11	9466370	A	G
Osa11LNT0094300.1	11	9466394	G	T
Osa11LNT0094300.1	11	9466418	T	C
Osa11LNT0094300.1	11	9466429	A	G
Osa11LNT0094300.1	11	9463494	A	C
Osa11LNT0094300.1	11	9463876	T	G
Osa11LNT0094300.1	11	9463982	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0094300.1	osa-miR5527	Translation	4.5	21.929	1	21
Osa11LNT0094300.1	osa-miR5804	Translation	4.5	17.1	1	21
Osa11LNT0094300.1	osa-miR535-3p	Cleavage	3.5	22.603	1	21
Osa11LNT0094300.1	osa-miR1852	Cleavage	5.0	15.701	1	21
Osa11LNT0094300.1	osa-miR2094-3p	Cleavage	4.0	22.533	1	22
Osa11LNT0094300.1	osa-miR2106	Translation	5.0	12.333	1	21
Osa11LNT0094300.1	osa-miR1881	Cleavage	5.0	14.002	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0094300.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0094300.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0094300.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus