\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0094400.1

AAAAAAAAATAACGGAGCAACACCGCTCCATTCACCTCTGTCAACACCAATTCAAATTATTCCTAAATCCACTCCTTGATTCACAAATTCACATAAATTTACACCAACAATTTACAATAAAAACAGTCAAAATTTTCCATTCACAATCAAAACAAATCCACACAAATCAACACATATTTTCCATTCACAAGCCACATAAATCTACACAAATGCACACAAATCCACAGAAATCCATTGAAATCTGAGCACCACCGCCCACGGCCCGGCGGCGTCGGTCGTGACGAGGTCAAGGCCGACGGTCGCGCTCCACCTCCCGAGGCCCCGCGGCCGTGCTACCCGCGCCACCGCCGGGGCGGATCCGTCCTCCCATTGCCCATCCTCCTCCCCACAGACAAATCTGGGAGAGGGGAGAGGATGGGATGGGAGGGCGCGGCGCCCCAGTAGAGGTAGTTACGGCTGATCTGCCTCTTGTCGACGCTCCTGACATGGAACCCGAGGTACGATAGCGAGTCAGTGAAGGACAGCACGCACAGGATGGTCGTGGTCGCCGTCGTCACCGCTTCCTTCGTGGTTGCCGTCGTCGCAGCTTCCTTCATGGTCGCCGTCGTCGCCGCTTCCGTCGTGCTCACCGTCGTCACCGTCGCCAGTTGCCGTCGTCGCCGTGCACATCCGCGCCGCGCCCCTCCCGCCGTCGTGGTCGCCGTCGTCAGCGCCGCGCCCGTCCTAGGAGTAGGAGGCTGGGGGCGCAGCCGCACAGGGAAGAGGAGGGGTCTCAGTGGGGGAGGAGGAGGAGAGGGAGGTGGGTGGGTGGAGAGGAGATAGAGGAGAGAGAGAGGCAGTGGGTGGGTGGAGAGGGAGGTGGGTGGGTGGAGAGGAGATAGAGGAGACAGAGGCAGTGGGTGGTTGAAGGGAATATCTCAGCGCGCGTGATTTTAAATGACGTCGATTTTTTTTAGCGGGCTCTGTTTTTTCGCAGGTGGAACTGTTTTTTTCGCTGGCGGAACTGTTTAGTAACCGCCAATAAAAAATATTGGTTTTCGCTGGCGGACATTTAAGAGGTCCGCCTCGAAAAATAGAGTATTTTTTATGGTGGACGTCTTAACATGGCCGCCAGGAAAAATAGGTTTTCGCTGGCGGTCCTATAACCCCCACCCCTCTTGATGTTTTTACTGGCGGTTTTAGCATATAACCACCAGTGAAAATTATAGTGCGACACCATGAAAAAATATTTTTCTACTATTGATATTTGGTTATATTTTGATAAAAAGAAAAACATATACTCGGATAATTAAAA

Coding Potentia
Explanation CPC Score
noncoding -1.12556
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0094400.1 11 9674586 C T
Osa11LNT0094400.1 11 9674662 A C
Osa11LNT0094400.1 11 9674909 T G
Osa11LNT0094400.1 11 9675572 A G
Osa11LNT0094400.1 11 9675730 G A
Osa11LNT0094400.1 11 9674833 A G
Osa11LNT0094400.1 11 9674777 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0094400.1 osa-miR5819 Cleavage 4.5 15.916 1 21
Osa11LNT0094400.1 osa-miR156c-3p Cleavage 3.5 2.608 1 22
Osa11LNT0094400.1 osa-miR156c-3p Cleavage 4.0 7.26 1 22
Osa11LNT0094400.1 osa-miR156f-3p Cleavage 4.0 2.608 1 22
Osa11LNT0094400.1 osa-miR156f-3p Cleavage 4.5 7.26 1 22
Osa11LNT0094400.1 osa-miR156g-3p Cleavage 3.5 2.608 1 22
Osa11LNT0094400.1 osa-miR156g-3p Cleavage 4.0 7.26 1 22
Osa11LNT0094400.1 osa-miR156h-3p Cleavage 4.0 2.608 1 22
Osa11LNT0094400.1 osa-miR156h-3p Cleavage 4.5 7.26 1 22
Osa11LNT0094400.1 osa-miR156l-3p Cleavage 4.0 2.608 1 22
Osa11LNT0094400.1 osa-miR156l-3p Cleavage 4.5 7.26 1 22
Osa11LNT0094400.1 osa-miR164e Cleavage 5.0 23.451 1 21
Osa11LNT0094400.1 osa-miR2275d Cleavage 5.0 2.821 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0094400.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0094400.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0094400.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus