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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0094600.1

CCAAAATCAAAGCCCCATTTATGGGGCAATTCATTATTCATTCTGTAGAATTCTTCTGAGCAAAACGGAGGCTAAACAAAACCAAGCATTGTAACACCATCTTTTCAGTCAAGAAACATGTACATTAAGCAGGGAGAGACTGGTATCCGAACATATGGATTACCATTATTACAGGTGCTAAGGCGCCGTACCACCAATGATGGTAAAGATCTAAACTAATGACCAGCAGGGCATATATCTTCCAAGCTTTTGCCCAGTAACTCAATGATGTCAGTGGTGACAGTTGATCTCTTGTTCTTCTCAAAAGCATGTGATGCAGCTTTCCTAAGTAGTAGAGAGCCAGCAATGCACCCAAGCATCATCGGATTCACGCTCTTCTCTGTAGGGTACTCATTCGTCAGGAGAAAGTGACGTGCCCATGATGCAAATACTGCAACACTTCCTGAAAGAATGTCACCTTGACCACCACATCTCCTTGGGGAACCAAAGGTACTTACTTGTGTTACAGTTTTGCCATCACTGATTATATCTGCTTTTCCTTTCCGCATGATGGTTATGCCACCGATTTTTTGGCATAGTGCAGTAAGTTGTTCAGAAGCGTTTTCCTCATTTACTTCACAGTTAAGAACCTTCTGGACAAGACGTTTGTACTCGTATACATTTGGTGTTAGGATGGCAAGCAAGTTACCCTCAACAAGACTAAGGTTATTGGTTATAAGGAAAAGGCCATCCCCGTCAACGACTGTTGGAATATTTGCCTGCCGTGCATGTCTCATGATATTACTTACACAGTCCTACAAGTAAGATATGTCAAAACAAACATAAGCTGACAAATTTGAATACTATCGTAAGTACTTAGGGCAAGATGGCATGATCTCCATATAGGAGATTAGACAAATAGATGACATGGGACATTAATACAAAAGAGAAATTTCAGTTCCAATTGAAAAAAGTCATGCATGGTTAAAACTCCTCCACACCTTCAAAATGAAGCTACCATTTCTAGCATGGAAAAAGTTTCAGGACTGAGGTTGTCATCTACATAGAGCATTAACCATATGAAACACAAGGTCCTTACTATCAAGGAACTTTATAATTTCAAACTGTAGATCTTCAGAAATACAGGATGAGTTATCAACACCAATCTGGTCTATCCTTGGCCCTGGGAGCTACTAATGCAATTAGGAATGGAGGTAGACACAGTTGCAACAATGCTTGACCAAAGGTGCAAACTGAAAATAAAATATATTCGAAATATGGTTAGTTTCAAAGGAAGAGAAAACAAGAATTATGACAGCAAAGATGTTTTCAACTGTCAATCAATATAATTAACTATCTTAAACTGTATAAAACGCAAAGGTAGCAACAAATAAGACTAATGAAGAAGACCTCAACAGGACAGAGATAGTGTTTATACTCCAGAAGATGTTAGGTATGTAAGCTGACCAGAAGAAATGAGTCCCTTCCAAGGCCAGGACCAACAACGATGCAATCAAAGCGCTCCATCCACTTTGCTACTTCTGTGAGAATTCTAGAAGAAACAGATTCTCTCTCACCATCGCTTACACTGTAAGATTCCTCTAGTATTGGATGTACAATCAGCTCAGGGCTATAACTCTTTATTACCGTTGCAGCATCTCTTGTGCAGAAAACATGTGAGAGATCTGCACCAACTTTCAAGGCAGAAATCGCTGCAAAATAGGGAGCACCAGTGTACTCACGACATCCACCAATTACAGCAATTTTCCCTGCCTGGCCCTTGTGGCGCGCGCGGTCGAGCGGCGGGGTGATCCGGCGGACCACCGCCTCAGCGTCCGCCTCGTACACGGGGCCCGATGCCGACATCGCGTTGACCCGAATGGAGGTCGACGGCGAGGGGGAGGAGGAGCAGGCGGCGTTGCCGGGGAGGGCGGCGCAGGGGGAGGGGGAAAGGGAACGGAGGAGGAAGAGGCGCCTGCGGAAGGCCGGTGAGGCGGCCCACATGCGGCCGCGGTGCTGCTGCTGATGCCA

Coding Potentia
Explanation CPC Score
noncoding -1.27874
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0094600.1 11 9818531 C T
Osa11LNT0094600.1 11 9815979 C T
Osa11LNT0094600.1 11 9816182 G A
Osa11LNT0094600.1 11 9816235 T C
Osa11LNT0094600.1 11 9816565 C G
Osa11LNT0094600.1 11 9817199 A G
Osa11LNT0094600.1 11 9817892 A T
Osa11LNT0094600.1 11 9818331 A G
Osa11LNT0094600.1 11 9819147 T A
Osa11LNT0094600.1 11 9819213 A T
Osa11LNT0094600.1 11 9819539 A C
Osa11LNT0094600.1 11 9819926 A G
Osa11LNT0094600.1 11 9816376 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0094600.1 osa-miR5827 Cleavage 4.5 18.092 1 21
Osa11LNT0094600.1 osa-miR444a-5p Cleavage 4.0 14.785 1 21
Osa11LNT0094600.1 osa-miR2103 Cleavage 4.5 22.926 1 22
Osa11LNT0094600.1 osa-miR5337a Cleavage 5.0 17.514 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0094600.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0094600.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0094600.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus