\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0094700.1

GGTCACCTGACAACATCGAGATTAATTCCTACTCCAGAATAGTTGTAATGCACAAAGAACATTTTCTGCGTCTAAAAGAAGCAAACCACATTCTTACGAACATAGACAATTTTCAAACAATTATACAACATATGACATACACATATGTGTTCCGTGTTAATAAGTTACGAGGTCCCAAGTAGCTTCTGGATATCATTCTCAATCTTTAATGGAGAAGTCGTCGGGGCATATCGCTCAACAACCTTGCCATCTTTACCAACGAGAAACTTCGTGAAGTTCCATTTGATGCCATCACCAAGGAATCCACCTTTCTGTGATTTCAAGAACTTGTATAGCGGTGCGGCCTCCTTCCCGTTAACATCAATCTTGTCAAAAATAGGAAATTCTGCTTTGAATCTGGTACAAACTGTTTGCTCAATCTCTTCATTGCTGCCAGGCTCTTGACCAGCAAATTGGTTGCACGGAAATGCGAGTATCTCAAGGCCTTTTTCTTTGTATTTCTCGTACAAGACATTCAACTCCTTGTAATTGGAATTTGTTAAGCCACATTTTGAGGCCACATTAACAATAAGAAGAACCTTCCCCTCATACTCGCTCAGCTTCACATCATTTCCCTTTATATCCTTGACGGAGATGTCGTGGACGGAGGTGGGCAGGTCGTCGGCCATGCTGGGCGCAGCAGGTGGCGGCGCGCGGAGGGAGAGGAGGGAGACGAGGGCGACGGCGAGCGCGAGGACGGCGAGTGAGGAGGTCCAGATCCGGTTGCCGCCGCCGCTGCTGCTACTTGTAGTTGTAGCCGCCATGGGCGGAGGTCGCAGGGCCGTCGCGATTGCGGAGATGATT

Coding Potentia
Explanation CPC Score
noncoding -1.07044
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0094700.1 11 10230975 T G
Osa11LNT0094700.1 11 10231195 T C
Osa11LNT0094700.1 11 10231241 T A
Osa11LNT0094700.1 11 10231293 C T
Osa11LNT0094700.1 11 10231468 G C
Osa11LNT0094700.1 11 10231887 A C
Osa11LNT0094700.1 11 10232141 G A
Osa11LNT0094700.1 11 10232292 T A
Osa11LNT0094700.1 11 10232428 G C
Osa11LNT0094700.1 11 10232787 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0094700.1 osa-miR5507 Cleavage 4.5 15.553 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0094700.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0094700.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0094700.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus