>Osa11LNT0095000.2

TAACTAAAAGAACCCATCAATAACTTTTACTGAATAACCATGAAATAGAAGGTAATTTACAAAGCTATTAGTTGTCATGAACTGGCAATAATTTCACAGATGCACAGCCAAAAGACACTCAAAATGGCATTCACTAAAGATCTTGGAAGCGCGCTAGGTGATGTCAGATTCCAGAAGGACAACACAAGATGCGACTAGCATCCCTCAGGTATGAATATCTGGGTATGGCGCACAACAGCAGCAGAGACATCAAAACCATGCACTGTTAAAAATACATCAAATCTATGAACACTAATGTTCTAAAAAATTCTTATCATTCTAAAAGTTCTAAAGGAGTTAAACGTCTCCAGACCAAATTAAATCTGAACTCAGAGGCACTTTGCAATCCAGATATGGGGTGGGATGCGTCGAGCATATTCAGCTGCCAGTAAACATTGTGCTCTCCAAGCAGCTATCAGCTACTGTTAGTACATCAACATGACATCATTGGCAGTGCTTTCCAGGAATGCTGTCTTCGGTGATTCCTTAACCGGACAAGAGTGAAGATATATCGGACAACACATCAATTCTGTTATCTAAGATGGCTTAGTCCTAGACATCTTTCCAACACTCCTCAAACATTGCTGCATTTTACTCAGTTCCTTTTGTGCCATGAAAGCATGAGCAGAGGAAACCTGTTGTATCAGAAGGCAGCTAGTATACATTATCCATTTATCCTCCTACCAGTTCCAAACATTTTGGTGAAACGACAAGATATCCCTCAAGATTTTTCTTCTTGCCCATGCACAGCTTAAGGAAACTATATCTGGAGCATAATTACATGGTTTCCAGACACTGCACCATTTACTCTTCATTGTTGGTGCAAATGAGCATCTTGCATAAACTGAGATCTCTGCCATTGCGCTACTTTCACTGCCACCATCTGGGGAAAGGTCAGGGCCATGCACCTTAAGATTCCATTTTTATGGTCCTAGCTTAACTTGGACACACAGAACCTCCATCATCAAGTTTAATTTTCTTATGCTGAGGTCTTCCATTTACTTTATCATCCCAATTTGCCACGTCAACACTTCTTTTACGTACACCACCAGAAACATGTGAAATAGTATGCACATTGCTAGAGCTTACTCCAGTAGCATTCACACTGTCACCATCCATCAGGTGCTCAGCATTGTCCATTTTGTTATTTGTGCTCTCATTACCTTTTCCATGGATTACGGAGAAAGAACAAGTATTTAGCTTCATATTCACATCAAAATTTACATCACAACCATTACCCACAGAAGGATATCCCATTTTCTCTTTCTGCTCTGAATAAGCAAGTTTAAGGTCTTTTCTTGTCGGGACAGGGAGAAAATCATCAATAGCACTACTGTTATTTGTTGGAAACATTGCTGTGATTGAATCATGAGACTGCCCGTCTAAAGGATTTCCAACCAAAGGATGAAATAGAGATTTTACACCATTCGAGCACCCCTGATTATTATCATATATGGGTAGATCAGGTGGAAGGTTGGCATCTTTTCTTCTAACTCTAAATACACCCCACAGAAAATGGAACATGTTCCATCGTTGGAAGTTATTTGGTAGGGTGTTTGAAGCAAATATGAGCAATTCAGCTGTTTCAATATTTCCTCTGAGTGCTAAATCATCCTTTAGCATATTTTCTACCAACTTCCTGTAGTGAATCTCATAGCTTTCAGTATCTCTCGCAAAGAAGAAAAGAGCAATGCTGTCAATCGTAGGGCCATTATCATGAAATTGTGGAGGCCATAAATTCTGACGAGGAAGTTCCTCAAGCTGGACGTTAGAAGGGAATTTCTTTGCTACTTCCAGCACTTTAGGTGATGCAAAGCATGATAAGTGGGCTTGCAAACCCTCACAAAGCACAGGTGATCTTACAGTCCTTGACAGCTCAAAACCACCTCGCCAAATATAATCCAACTCTGGAATAGTTGAAGCTATATGTTTACAGCTAGGTGAAAAGCTTTGACTGGAAAACGTTATTTTTTTTTCCTTCATATCCTTTGACATGGCAGAGATGCTGTCCACAGATCTTCCTCGCATGGAAGGTACAGTCTGGTGATCTCTCAATGATGCGCTGCCAGGAATGGACACACTGCTAGAATTACTAGGTACCAAGCTAGATGGGCTCTTTATTTGATCATCCAGATGTGATGAATCTGGAACCTGAATTGTCTTTTTCTGTGCACCTGAACCAAGCATACCTATGTTGGCATGTCCTTTTGTGTGAGGAGGTTTCTTTATACCACAATGTCCAAGAAAACTTCTAGCACCTTCACCGCCAGAAGTGCCTAAAATATTTGAATCAGCCATTCTATTTCCTTTATTGAGATGTTGTGCTGAAGACTGTGCTTTCGAATGAACTGGGACAGTCACTGATCCAGTAAGGGAGCGGGACCCTAATATTGAAGTCAATATATCGTTTCTTGCATTTTCGCTCACAAGTGGATTCATCACCGTGGAAGGCTTTGCCTTATTTACTGGCTCAAAACATTTAGGTTTTTTAAATGATGCTGACTTAGCAAGTATTCCCATTGGCCCCTCTTTTCTCATAGGAGTGGACAAAGAGTCCTTGAAAGTTTTGGGCTTCTGAGGAACTTCATTCAGTAGCTGTTTCACCTTAGGGACCTTTGAATTGTTGAAAGAAGTGGATTTGGAGAGTTGACCGCGAAGAGGTGCCATTTGATTCTTAGGATAATTAGATGTCAACAAGGTTGAAACATGTCCAGCAGGGTCCTTTCCTTTCTTTCCATCCAGCTTGAATGAGCTTTCACGTGACACTGGATTTTGTCTCACCAGTGAAGTAATCCCTGCATCCCCATCCTTCCTCTTGTTGACACTGTTCATTTCATTTCCTCTGTTTGACATATTACTTCCCACATTTTCAGCATCCACACCATTCTCAGAAGAACTTGGTTTGTTCATTGGTCCTTTGGAACCACCAACCTTTAATTCGGATGTTTCTATTTTGTTCTTTCTCTTTTCACTCTCTACTTCACTATGGCATGTTTCACATAGCCACTTAGCCTTTGGAACCTCTTGCATCATCACTCGCATGCAGTAAATATGCTCAGCACCGTCATTGCATCTACTGCACACAGCAAGCTTCTCCTCAGCACCAATATCTCCACATATGTCGCAGACTTTCACATCTTCAACCTCTTCAGAACTTTTAACCTCACTCTTTATAGAACTTTTATTCTTTACAGCCATATTAGATATGTCATGAGCCACGGATGTAAATGGAACATCATTATTGTGGCTTTGCATATGCCTCTCTCCATCTAGTATCTTCAAATTAAAATCATCATTTCTCCCACTGGATGTCTGCTCTTCGTTTTTATTAGCAGCCTCACTGCCACCAATGCATGATCTACCGTCTTCCTCCTTTCCTGTAGAAGTACAGCCACTAGGGACAATCCCTTCCTCTGCATCTTCTTTTGTACTCTTACTGGATATATTACTCACATTTAGGTCTTTACTACTCACATTTGCAGCCTTCACCTTACTCCCTACAGAAATTGTACTAACCTTCACTTGAGATTTCTCAAGTATGCTCTTTTCTTTTTCAATCTGCATCTCAGTTCGGCACTCTTCACAAAACCAATCACCCTCTGGAACCTCTGGCATCATTACCCTCATGCAGTAAATATGTTCAGCACCATCATTGCACCTACTGCAAATAGCAAGCTTCTTCTCCTCACCAACATCTCCACATATGTCACATATTTTCACATCTTCACTTTCTTCAGAACTACTATCCACATAGGTGACATTGTTCTCTTGTGCGTTTGACACTAGATCATCCATCCGGCGTCGCATGTCTCTGATTCAGGTTTGTCAAGAAGGTTCTGGCTCACCGATGTGCTTTCTTTCTCAGAGTTGAAAATCACCCAGGATGCGGCGGAAGCAGCATGACGAACGATGGCGCCCTGCTCGCCGGCGCCTCGCGGGATGGATGGGGATCGGCGGCGGCGGAGGCGGCGGCGGCGGAGGGCAAACTGATGGATAACTCACGACAGAGGACAACTA

Explanation	CPC Score
noncoding (weak)	-0.872132

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0095000.2	11	10650744	C	T
Osa11LNT0095000.2	11	10648129	A	G
Osa11LNT0095000.2	11	10648693	G	C
Osa11LNT0095000.2	11	10648697	A	C
Osa11LNT0095000.2	11	10649708	T	G
Osa11LNT0095000.2	11	10649863	A	G
Osa11LNT0095000.2	11	10650012	G	C
Osa11LNT0095000.2	11	10650271	T	A
Osa11LNT0095000.2	11	10650635	A	G
Osa11LNT0095000.2	11	10652669	T	A
Osa11LNT0095000.2	11	10652987	T	C
Osa11LNT0095000.2	11	10653392	C	T
Osa11LNT0095000.2	11	10653517	G	C
Osa11LNT0095000.2	11	10653544	A	T
Osa11LNT0095000.2	11	10654156	G	C
Osa11LNT0095000.2	11	10654449	T	C
Osa11LNT0095000.2	11	10653244	T	G
Osa11LNT0095000.2	11	10656197	T	A
Osa11LNT0095000.2	11	10652403	A	C
Osa11LNT0095000.2	11	10653232	A	G
Osa11LNT0095000.2	11	10649984	C	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0095000.2	osa-miR5532	Cleavage	5.0	19.547	1	22
Osa11LNT0095000.2	osa-miR5801	Cleavage	5.0	22.852	1	24
Osa11LNT0095000.2	osa-miR5143b	Cleavage	5.0	11.093	1	24
Osa11LNT0095000.2	osa-miR530-3p	Cleavage	4.0	14.861	1	21
Osa11LNT0095000.2	osa-miR395o	Translation	4.5	9.818	1	21
Osa11LNT0095000.2	osa-miR529b	Cleavage	4.5	6.829	1	21
Osa11LNT0095000.2	osa-miR1853-3p	Translation	4.0	15.885	1	22
Osa11LNT0095000.2	osa-miR2118a	Translation	4.0	23.374	1	22
Osa11LNT0095000.2	osa-miR2874	Cleavage	4.0	6.034	1	24
Osa11LNT0095000.2	osa-miR2874	Cleavage	4.5	6.45	1	24
Osa11LNT0095000.2	osa-miR395x	Translation	3.5	21.381	1	21
Osa11LNT0095000.2	osa-miR5143a	Cleavage	5.0	11.093	1	24
Osa11LNT0095000.2	osa-miR5144-3p	Translation	5.0	18.936	1	21
Osa11LNT0095000.2	osa-miR5508	Cleavage	4.0	13.139	1	21
Osa11LNT0095000.2	osa-miR5508	Translation	4.5	14.749	1	21
Osa11LNT0095000.2	osa-miR530-3p	Cleavage	4.5	15.777	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0095000.2	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0095000.2	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0095000.2	11	nan	Morphological trait	Seed	RM332	RM229

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus