>Osa11LNT0095100.1

GTCAGTAACTAGCAGATCTTTTAATTGCCTGTGAGGATTATCAAGCAGGGCTAGAGTCTACAATAGCGTGATGTTGTACAGTGAAAGCAATCTAATTCTAAATGACAAAGCAGATGAATGTAATCAAAATGTTACAACCAGTAAACTGCAAGCAATTACCCCAGAAAAATCAATTCAGATTATTCACCTATGTATTACGATTAAAGAGCAAGACCAGGCTTATCAAAAGCTCAATATTAAGCGCCTAAAATACAAAAAGAACAGGGTATCTTTGCACAAAAGTGACTATTAGAACTACAATAATGTATGTACACCTTGACAGAACAATTCCACAATACTTTTAAAGATATCTTTCTAAAAAATCATCTGTAAAATGCTAAGCTAAGCATCCATTCATCTGTAAAATAAAATAAAGTAAGAAGAGATATTTTGCGAGTTTATGATCACCGCAGATTCCCAGTTAGTGAAAACTACTGAAGCATAGAAAAGAGCAGCTAATTCCGTACTCACTCAAAATCTTTATAGACTAGAAAATCAAACTGATATATCTACAATCAAAAACTAAGTCTATAGTGAAATATATATTTTTTAGGCAACAAAATGGTTGTATTAATTTTGGAGCACTATGTTTTAGGGAACAATTATATTTTATTTTAGTTCTAC

Explanation	CPC Score
noncoding	-1.04975

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0095100.1	11	10772606	C	T
Osa11LNT0095100.1	11	10772967	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0095100.1	osa-miR5536	Cleavage	5.0	11.377	1	22
Osa11LNT0095100.1	osa-miR1847.1	Translation	4.5	10.268	1	21
Osa11LNT0095100.1	osa-miR1853-3p	Cleavage	4.0	16.672	1	22
Osa11LNT0095100.1	osa-miR2871a-3p	Cleavage	4.5	13.016	1	21
Osa11LNT0095100.1	osa-miR2871b	Cleavage	4.5	13.016	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0095100.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0095100.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0095100.1	11	nan	Morphological trait	Seed	RM332	RM229

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus