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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0095700.2

GTGTTTGAAACAAATTCAATATACCATGTCCGGTGCCAGATCAATTCTCACCGTTATTATTGACATGTGTAGAAACAAAAAAAAAGTTTATAACAAGCAAAGACATAGATTGTCTAAAAGTTCTCTAATGTTTCCATGCTGCGGTATAGTACGTAGTATATACCACCTAATATCCAGATCCTGTGCTACTAAAAAATTACCGTCAGTCTTAGGTAGCACAAATTTGAACTATCATTCTCTAAGAGCCAACTGCGTATTTCATGATATTTTGCAATTTCTCTAGCATCCCTTCTCTAAGTAAGTCTGCTATGATAAAAAATAGAAAGATGAGGTAATCAACATTGCACAACTTGAGGAGCACCAACCCCCTGCTTCTTAGGCTATTCCACATGGCATTCAGGTAATCAGCATTTGTACCCAATCCTTTTTTTTTTCAAATTTGTATTCTTCATAGTTGCAAAGTAGATGGTCCTTGTGAGTACCTCTATAAATGATGAAACATCAAAAGACTTGGCCATTTGCTTTGTTGTTACCATCATCCATCCTAAGCCATTGATTTTAGTACCATCGATGGGGTGAAATTGTTTAGCAATCACATATGCTTCTCTCTTTCCTATGTTTCATGTTGCAGAGTCATAATCACATTGGAAATTAATATGTTGATGGCGTAGTCCCTGCTTGACACCATTGGTCATGCCAAAAACCCTGAGTGCGTCATGAGAAAAACCGGCATATCGTTGTTGAAATTGCATGGAACACAAGAAACTACAAATAATGGGCTCTAATTTGTCTCCACGGTTTTGGATGATGTCAACAACCAACTTGTGGGATGCTCCCTATCATTATAAAGACTTGCGGTGTAGATATGCAATTATTCTTGTATATTGTCCAGTCCATTGAAGTAAACCCATGTGGAATGGAGGACGAAGACACCGACAGGGCAAGATATTGCTAGACGCGAGTGATTCCCCTATGCAATCAGCTCACTGCACAAGAGAGGACCAGCGTCCAGGGAGGACCGGCGCCCTGGAAGCATCGGAGCTGCTTGATATGGGCAGACTCTACCCCTTAACTGTCGCGGCCACAAGAGGCGTGGCAGGGAGCCAGTGGAAGGCAGGATCACAAGGACGTGACGGGGCGACTGCGCCGGTGGAAAGGAAGCTCCACCAGGACGTTGATTGATGCGGAAGAACTTATGGCAGCGCGAGCGAACAAGAAGGCCCCCGGGGGCGGGAGGATGGGGAGGGGGGGCAGCGATGGGAGGAGGCGGACGGCGATGCAGAAGGGACCGAAGTCGGCTCCGGTGGCGGATCCGAGTGGGAGAAGCACGATCTGGCCGCGTCTCCGGCGAGGACGCGGCGTAGCGCCGGCAGCGGGGCGTGGCGGTGGGGAAGAAGGAGGACGGCCGCGGCGTAGCGGTGGCAGCGGGGAGTAGGAGGAGCGAGCGAGGAGGACGGCCACGGTGGCTCCGGCGAGGACGCGGAGGAGCGGCGGCAGCGGGGAGTCGCTCCTGCGAGGACGCGGGGAGGAGTGAACGAGGAAGAGAAGCGCGCGGTCTCCGCGGCCGCGGGT

Coding Potentia
Explanation CPC Score
noncoding -1.2498
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0095700.2 11 11714790 G A
Osa11LNT0095700.2 11 11714999 G A
Osa11LNT0095700.2 11 11715957 A C
Osa11LNT0095700.2 11 11716215 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0095700.2 osa-miR5817 Cleavage 3.5 5.554 1 24
Osa11LNT0095700.2 osa-miR5837.2 Cleavage 5.0 15.071 1 21
Osa11LNT0095700.2 osa-miR6251 Translation 5.0 17.864 1 21
Osa11LNT0095700.2 osa-miR156j-3p Cleavage 3.0 23.718 1 22
Osa11LNT0095700.2 osa-miR156j-3p Cleavage 5.0 22.911 1 22
Osa11LNT0095700.2 osa-miR2905 Cleavage 3.5 16.467 1 21
Osa11LNT0095700.2 osa-miR5072 Translation 4.5 23.402 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0095700.2 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0095700.2 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0095700.2 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus