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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0095800.1

GCATAAAATGGTTAGATAGTAGATAATATTTTGATAAATACGGTCTACATTTGTTTAATAAACAGAGTACAATAAAGTATAAGTAGTCCTTGTGAATCCATTAGGTGGCTTAATAGAAGACAACACACCAACAAAGATGAACAATAAAAAAGTGAATTGGGCTATAATTTTCATCAACAAAAAGGACAAACACTTTCAAATGGGTCATTTAGTGGATGCTATGATTGGCATTCTTCTCCACCATAAAGGACTACAAGTGGAAAGAGCTCATTACAAACCACAATTCTGTCTGCAAACATCTTCAAACCAGTTCAGCGCAGCTGCAAGATGCAAATGGTTCGCTATTCAAGCGTGTAAACATGTTTTATCTTTCAGAAGGTCACTGCATGCTCAGTATTCAACATGTCTTCCCAAGCACTTTTACATTTTGTCAAGAAATCACCAGTTTCGGCTGACCATTTCTGCCACCAGTAGTTGTGACAATTATGTGGCCGGTTTCTGCTCCCTTGCCGTTAATATTAGTCACTTGAACTTCATTGTCATCCCTTATCTTCAGATCATGCATCTGATCAGGCAACTTCTCAGCACCCATTGTGGTGAAGCTGCTGTTCTTTAACCCAGATAGCGCAGCCCCTATTGAAGCCATCTGTTATAAAAGCTAAACAATGTTGAGTCAGCTTTGCATCCACACAGAATTCCGCAATGCATCTATCAGTCGACTGCTTGCAGCAGTCAACTGACTTGGTGTTTGTAAGTTTCATGAGCAGAAGAGTTGGATCAGAGACTCGGAGTATTATTCCTTATCTTGTACTCCTATTTGGTTGTCATTATGATGCTGGCAGCTCCATTCATGAAGATCCACGAGCTGAGTATAGTGGGTTGCCCCTCCCAACATTAACATGAGTAATGAAGGGAATCTATTCCTTGAATATTGAGCTAGGATCTTCGGCCTTTTTCCGTTGACTTTGCCTGGATGTCTTATTCTGAATGGCTACATAAGAGCATGAATCAGAGATTGAGGGAAGTAGCTCAAGAAGCTCCTGCGATGGCCGATGGAGGCCTAGTCGACAGCGTTGACCTCTAGCAGCTACAGGAGTGGCTGTTGATGAAGGCCAGACAGCTAGAAGCCGGAGGGGCCAGAGACGCTGAGGGTCTGACATGCTGGAGTGGACGCAAGCGGGATGGTGGGGGGACTCACCTAGCATGCTGAGTCGAGGAGGTGTCAGATCCGGCAGGAGGAGGCTGCAGTGGAGGTTGATCTGGTGAGGAGAAATCGCTAGGCGCATCCGCACCTATCCGAGCACGGATGTCATCCGTTGGTCATGGCGTGGAGGTGGGGGTTGTGAAGAAGTAGAACGAAGGGACGGGGAGGAAGGAGGCGGCGTGAGACGAAGAGAGGAAGCTGGGGCTGGCGGCCGAGCGTACCGGCCGGCTTAGAGGAGGAGGTATGGCGCCGTCGGTGAGGAGGAGGGAGCGGGCTAGGGGGTGGAGCGAGCCTGCTATGGCGGCGGCGGCGGTGGGGGGACGACGATCCGCGTCAGATCTGGAAGGGAGGGCCGCCGCCGCATCCACCCTCCGCGCCGCCTCCACCCTTCACCTCCGCCTCCACCGGATCTGGGAGGAAGGAGGGGAGCCGCCGCTGGCTCCACCCCTCGCGCAGCCACCGCCTGAAGCCGCCGCCGCCACCGCCAGTAACTGCCGCCGCCATGGCAGCTCGAGCCGGAATCTGAGCTGAGAGAGGAGAGATGGGAGAGAAGGGGAGGGGAGGAGAGGAGAGGGAGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.583879
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0095800.1 osa-miR6255 Cleavage 5.0 17.556 1 22
Osa11LNT0095800.1 osa-miR167a-5p Cleavage 3.5 20.749 1 21
Osa11LNT0095800.1 osa-miR167b Cleavage 3.5 20.749 1 21
Osa11LNT0095800.1 osa-miR167c-5p Cleavage 3.5 20.749 1 21
Osa11LNT0095800.1 osa-miR395t Cleavage 5.0 9.434 1 21
Osa11LNT0095800.1 osa-miR395a Cleavage 5.0 9.434 1 21
Osa11LNT0095800.1 osa-miR167d-5p Cleavage 3.5 20.749 1 21
Osa11LNT0095800.1 osa-miR167e-5p Cleavage 3.5 20.749 1 21
Osa11LNT0095800.1 osa-miR167f Cleavage 3.5 20.749 1 21
Osa11LNT0095800.1 osa-miR167g Cleavage 3.5 20.749 1 21
Osa11LNT0095800.1 osa-miR167h-5p Cleavage 3.5 20.749 1 21
Osa11LNT0095800.1 osa-miR167i-5p Cleavage 3.5 20.749 1 21
Osa11LNT0095800.1 osa-miR166i-3p Translation 4.5 19.947 1 21
Osa11LNT0095800.1 osa-miR167j Cleavage 3.5 20.749 1 21
Osa11LNT0095800.1 osa-miR1847.1 Cleavage 5.0 14.33 1 21
Osa11LNT0095800.1 osa-miR2101-5p Cleavage 3.5 17.71 1 22
Osa11LNT0095800.1 osa-miR5145 Translation 5.0 17.71 1 24
Osa11LNT0095800.1 osa-miR5485 Cleavage 5.0 19.656 1 21
Osa11LNT0095800.1 osa-miR5507 Translation 5.0 9.479 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0095800.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0095800.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0095800.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus