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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0095900.2

CCTCCGACCAATCATGCGCGAGTAGAGAGCCCACAAGTCAGTTGAAACATACTTAAAATGGGGCCAAACTGTAACACCCCAGGTAGCCACGTACCTAGAATGCCACACCAAAATACACTCAAAAACCACTAACTCCAAAAATTATTAGAAATTTCGGCAGAGTCTCCCCTAAAAATACGGATATCCACGACAGGCAATTATAAGATAACTCAATAACAATATAATCCACGCAATCCAAACCATCCTAGCTCCACAAATTCTACGTGAAAGTAAGGACCATAACTTTAAATGACAGTTACAAGTTCTACGGAAAACTTATGCTAAGCAAAAACATAGTCTAAAACTAAATTTCAATAGTGTGCAATAATAGTGTGTAGTTCAAGGGTGCTACTCCCGTCCCATGCCGATCAATACCATTAGGTACCTTAACTTCTTCGATACTCCGACTCAACTCCAACGTTGGAACCCTCCACACCATTAACCCTTCGATCCGTGGCATGCTGTTCATGTGAAAACACGGCGGCCTAGGGGATCTTCTTAACTCCAGTGCAAGTCCAAGGCTAGCCTCAAGTGTATCAAGGGCGTGCCAACTGATTTGATCCTTGTTTGTGACCTTTTGATTCATATACATTTTGTTTGTTCAAGCTACAAGTTCATAGCTAGCGTTTTATTCCTTTAGGAGGAGCCCTTGGAGGTCGTCGCCGACTGCCTCCTCCACCTTGGCGGTGTTCGTCTCCACGCCCTTCCCAACCCCATTTAGAACCCCACCATGCAGACCTTGGCTTTGCACTGCTGCTGGAGGAAGACCAGAGGAGGAGCTGTTGCCGTGGTGCTGCTGCCGGAAGAAGGCCGGAGGAGGAGCTGCTGCTGCACGTGGTGGCCGGATCCGGCGTGACGCAAAGGAGGAGGGGCGCTGCTGCCGCGCGTGGTGGCTGGATCTGGCGGCCCCGACCTCCAAGCGGCCGGATCCGGTGTGACGCGGAGGAGGAGAAGCAGGAGTGGTGGCGGGGGTTGAGGGAGGAGAGGAGGAGCAGTGCGGCTCGGATTGGCGCCGCCGGGTAGAGAAGAAGTGGTGGTGGGGAGAGAGGGAGGAGGGAAAAAAGGAGGAGGCGGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.814958
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0095900.2 11 11757679 T C
Osa11LNT0095900.2 11 11757854 G A
Osa11LNT0095900.2 11 11760545 T C
Osa11LNT0095900.2 11 11745285 A G
Osa11LNT0095900.2 11 11745763 T C
Osa11LNT0095900.2 11 11745764 G T
Osa11LNT0095900.2 11 11745891 T C
Osa11LNT0095900.2 11 11745965 T C
Osa11LNT0095900.2 11 11746154 T C
Osa11LNT0095900.2 11 11746772 T C
Osa11LNT0095900.2 11 11748087 T C
Osa11LNT0095900.2 11 11748261 A G
Osa11LNT0095900.2 11 11748326 A G
Osa11LNT0095900.2 11 11748333 T C
Osa11LNT0095900.2 11 11748348 T C
Osa11LNT0095900.2 11 11748724 A G
Osa11LNT0095900.2 11 11749290 C T
Osa11LNT0095900.2 11 11750155 G A
Osa11LNT0095900.2 11 11751469 G A
Osa11LNT0095900.2 11 11751785 G T
Osa11LNT0095900.2 11 11752653 A T
Osa11LNT0095900.2 11 11752740 A G
Osa11LNT0095900.2 11 11752773 T C
Osa11LNT0095900.2 11 11753034 T C
Osa11LNT0095900.2 11 11753041 T C
Osa11LNT0095900.2 11 11753150 G A
Osa11LNT0095900.2 11 11753211 T C
Osa11LNT0095900.2 11 11753249 A G
Osa11LNT0095900.2 11 11753488 A G
Osa11LNT0095900.2 11 11753608 A C
Osa11LNT0095900.2 11 11753619 A C
Osa11LNT0095900.2 11 11754187 A G
Osa11LNT0095900.2 11 11754806 C T
Osa11LNT0095900.2 11 11754820 T C
Osa11LNT0095900.2 11 11755354 T C
Osa11LNT0095900.2 11 11755607 T G
Osa11LNT0095900.2 11 11755815 T C
Osa11LNT0095900.2 11 11755823 T C
Osa11LNT0095900.2 11 11755831 A G
Osa11LNT0095900.2 11 11755941 G A
Osa11LNT0095900.2 11 11756072 T C
Osa11LNT0095900.2 11 11756171 A G
Osa11LNT0095900.2 11 11756457 A G
Osa11LNT0095900.2 11 11757217 A G
Osa11LNT0095900.2 11 11758215 C T
Osa11LNT0095900.2 11 11758553 A G
Osa11LNT0095900.2 11 11758874 A G
Osa11LNT0095900.2 11 11758995 A G
Osa11LNT0095900.2 11 11759298 T C
Osa11LNT0095900.2 11 11759683 A G
Osa11LNT0095900.2 11 11760031 A G
Osa11LNT0095900.2 11 11760056 A G
Osa11LNT0095900.2 11 11760130 A G
Osa11LNT0095900.2 11 11755783 A G
Osa11LNT0095900.2 11 11749203 A G
Osa11LNT0095900.2 11 11760445 A C
Osa11LNT0095900.2 11 11760488 A T
Osa11LNT0095900.2 11 11746696 T C
Osa11LNT0095900.2 11 11755200 A G
Osa11LNT0095900.2 11 11755777 A G
Osa11LNT0095900.2 11 11759980 A T
Osa11LNT0095900.2 11 11760241 A G
Osa11LNT0095900.2 11 11760317 C T
Osa11LNT0095900.2 11 11760541 C G
Osa11LNT0095900.2 11 11751476 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0095900.2 osa-miR5797 Cleavage 4.5 9.54 1 21
Osa11LNT0095900.2 osa-miR1866-5p Cleavage 4.5 9.654 1 24
Osa11LNT0095900.2 osa-miR2097-3p Cleavage 5.0 19.746 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0095900.2 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0095900.2 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0095900.2 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus