>Osa11LNT0096100.2

CTCTTTCTCCCGTAACTTCTTCCCTTTATTCTCTCTTTCTCCCGTAACTCCCGTCACGCGCCTCAATCTCGCCGCCGATCTCCACGCCCCGCGCCGCCCCTCAATTTGCTCCGCAGCGCCACCGATTCCTATCGCCCTCCTCCCCTCGCGATTCCCTACCCGCCGCCCTCCATCCCCGGCCTCGCGCCGCCGCCTCCCTCGCCGCCAATCCCCATCGACCGTCACCCGCACGTCTTCCGCGGCCACGCCACCGTCGATCCCCGTCGAGCACGACCACGCCTCACGCCGATCCTCCATCGCGCGCCGCCACCGATCCCCTCCCTCGCGACGCCGCCTCCCTCGTCGCCGATCCCATCGACCGTCGCCCGCACGTCTTCCGCGGCCACGCCACCGCCGATCCCCATCGACCACGACCACGCCGCCCGCCGATCCGTAACAAGCCTGCCGCCAGGCCTGGGTTCCAGTCTTCGCCGACAATGCCGGTGCCACCATCCACCACCACCGGATTGGAACCGCGCCTGGGCACCACCACCTTCGTGCCGCCTTTGTGAACCAATTTCTTCACATTCTTTGCAGCTCATGAATGCCTCATTTCAAAACAAAAAAAACATTATCTATTATACCATAAGAGCTCCCCTTTAGCAATTGGTTATATCTTCAGTAATGACATTTGAACATGGACAGATAGAGGTACAAATTATATGCCCTAAGAGCATGCAATTACTAAATTTGGTATGGAGTAGGGCAAGTATATATATATAAATTAGTTGTACGGAGTAGAACAGGTATATAATGGGATTCGTGTTTACCATGCAATTCTGAATTGGTGATGAAATTTCATAGGTTTTATATGTGTGAGTTTATCACTGCTGCTGCTGATGTTATAGTTAAATGAGGACCACTCTGTTAATGTACTGGAAATTGGAAACTACAAATTTATATCACTGTTACATGTTGATATTTATATAAAATTCGACTTTTGAGTGTACAACCAGAACTCCGTATATTAAAGATAAGACTCGTATCAAAAGAAAATGAGGTTGTCCTCGAAAACCCATGTGCAATATTCACTATTCATATCCTACAAATTGATTGATGGTATGGAGGGGGCTGGGCTTAGAATTATTAATATGGTCAACTCAGGCAATCTTGCATCTGGTTGCCATCAGTGGGGCTTTCATTCAGCAGAAATTGTCTACAAAATGCACCCTTTATATGTACCTGTTTGCACATGCTTGTAGGTATTCCATGCATGGGTTATTTTAGCTGCACATGTACCGCTCCAATTTGAGCTATTTTCAACTAATTAATTATGTAGTTATTCTCTTGATTCTCTGATCCCTCAAATATTAATTATTCTTTTTGCACCTTGTTTTTACCAATATAGCTACCTTAAACTGGTATAGGAACTAATATGCTTTTTAATATTTCTATACATATGCGTTAACTCAGATAGTTGCCCTCCGTGTGTTGTTTTGTTAGCAGGGGCAATATCAAGATAAACCTCATATTTCTATCCTTTTGACAACATCATCTTTATTAATCTTAAGGTGCATACAAGTGGTGAAAATGTATATTTAGCTCATAAGTTGTGACGGTTGGCTAAGTGTAGTAGATGGAGTTGGCAGATAGTTATTGACGGTTGGCTAAGTGTAGTAGATGGAGTTGGCAGATGGTTATTTGGAGGTGCGCGAAAAGGATTCCAAGGTTCTCAACACATAGGCTTTCAACTGGGAAAACAAGAACGGCTGGAAGAAGCATTGCCGCGGGTTGCTACTTGGTCTTTTAGGTCACAATTCTGGTGTTGGGAGTTGTTTATTTATTAATGATCAGCGAGTCTCTTGTTGCTACAACAGAATGGTCTTGTGATACAGACGAGAAGTCTCCTTCCATTAACAATAACACTGGTTGCACATGCTCTGTCTTCCTGCAAAAGTGTTGTTGGCATTTGTGATTTTTGTAGTTGATTTTACTGATAAAAAGTGCAGATCATGCAATTTATTGATATGTTTGCTGGTTGAAAAATTGAGATTTGATTTCTTAATTCTGATTGTTGGGGATTACATTTTAAAC

Explanation	CPC Score
noncoding	-1.28909

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0096100.2	11	12010954	A	G
Osa11LNT0096100.2	11	12011344	T	C
Osa11LNT0096100.2	11	12012129	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0096100.2	osa-miR5819	Cleavage	5.0	16.289	1	21
Osa11LNT0096100.2	osa-miR7694-3p	Cleavage	3.5	21.561	1	22
Osa11LNT0096100.2	osa-miR160a-5p	Cleavage	4.5	12.362	1	21
Osa11LNT0096100.2	osa-miR160b-5p	Cleavage	4.5	12.362	1	21
Osa11LNT0096100.2	osa-miR160c-5p	Cleavage	4.5	12.362	1	21
Osa11LNT0096100.2	osa-miR160d-5p	Cleavage	4.5	12.362	1	21
Osa11LNT0096100.2	osa-miR160e-5p	Cleavage	4.5	12.362	1	21
Osa11LNT0096100.2	osa-miR160f-5p	Cleavage	5.0	12.362	1	21
Osa11LNT0096100.2	osa-miR812g	Cleavage	4.5	4.944	1	24
Osa11LNT0096100.2	osa-miR812h	Cleavage	4.5	4.944	1	24
Osa11LNT0096100.2	osa-miR812i	Cleavage	4.5	4.944	1	24
Osa11LNT0096100.2	osa-miR812j	Cleavage	4.5	4.944	1	24
Osa11LNT0096100.2	osa-miR827	Cleavage	4.0	16.826	1	21
Osa11LNT0096100.2	osa-miR2869	Translation	5.0	20.291	1	21
Osa11LNT0096100.2	osa-miR2876-5p	Cleavage	4.5	20.169	1	21
Osa11LNT0096100.2	osa-miR2877	Cleavage	3.5	14.131	1	24
Osa11LNT0096100.2	osa-miR5078	Cleavage	4.5	13.256	1	21
Osa11LNT0096100.2	osa-miR5081	Translation	4.0	12.78	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0096100.2	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0096100.2	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0096100.2	11	nan	Morphological trait	Seed	RM332	RM229

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus