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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0008000.1

TGGCAGGCACTACCATGCAAGCGGCAAACCGGGGGAGAGAAGAAAAGCAATCGCTGACCGGACAAATGTGAAAGAGGCTCCGAGTTTCAGCCGAAGTTTAAAATCAAGCAAGCAGCCATCAGCACGAGACGACGACTTGAATACTTTGATCATCAACACGAGGCCAGAAGAATCCATCAAAACTGAACTGTCCAAGAGATTAGGGAAAAGAAACCAAAAGGAAAAAAAAACAGAGTAGAGAGTAGAGCATCACTTCCGTAGAAGATTCAGTTCTCATCAGGCGGCAATATGGAAGGGTTCACATTATCACATAGATGAAGTGACCTACCGACCTCGCCTCAGGAGACCAGCTATCCTGGATTATTCTACAAGAGAGGTGCCATGCAGAGAAGCAGTCCAGTTAGTCTGAAGCCAAACTGTTCCTCTCCCTTGTCCAAACTAAATGGTTTACAGCTAGCTAAACAACATCACATGGGGAGTCTGACTGATGCAAGATTCCTGGGTGAACCACTGCATCTTAGCTTCAGCGCATCTGCTTCTTCAGGTAGTATTTGCAAACAAAATATGAGCTTCATCCATTTGATCCAAATAAATTTGGTCACCTCTCTGGTATACTTCAAGTACCTTCTACAGTTACAAATGATCTGCTTAGTAATTATTGGCTTAGGTTTATGGTGTCCTTGACAAGCTTGCAAATGCTAGCTTTCAATTCAGGAGTAACCTTGAGTTGCTGAGGACATGTATCCAGGACGAATAAAGTAAGAATTCTCATAGTATCTGACAGGATCACTTTATCATGCCTAGATACTTCCTGGTTAACAAACTGGCATGAATTTCTCATCTTACAAGAGCCGCATATTTTAGCTTCCTGGATTTTAAAGAAAGCTCGTAGTCTTTTTGATGCAAAAACTGTTCTTCGCTCAACAGATGGACAACCAAACAACGCAACCTTCTTCAAGTCACTTCCAGATAACCATTTGGCGACGACCTGGTGATCATGACCGAACCGCTCGGCCGCGCCCTTGACGACGTCGGGGGACAAGACGTGCGGCGCCACCGACAAGTCAGGCCCCGGGAGGTACCCGCCGTCGTAGAACCTCCGGAGCAGCGCCGCCGCCTCCTCCCCCCACGGCTGCCTCGACCTCGGCCTCGGCCTCGCCCTCGGCTTCCTCCGCTCCTGCGGTGGCCCATCCCCGGGCTCCGGCCGCGGGGCGCGAGGCTTCGGAGAGCTTCGAGGCGCGAAGAGGGAAGAGAGCGTCCCAGGCCGCGCGGCGTCGCCGCCGGCGGCGGAGGAGAGCCGGCGAGCGGCGGAGAGTGCCATGGGTTGAGAGGGTTCGGGTGACG

Coding Potentia
Explanation CPC Score
noncoding -1.04629
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0008000.1 1 5676080 A C
Osa01LNT0008000.1 1 5676251 G T
Osa01LNT0008000.1 1 5677032 C A
Osa01LNT0008000.1 1 5677102 A G
Osa01LNT0008000.1 1 5677240 A T
Osa01LNT0008000.1 1 5677477 A T
Osa01LNT0008000.1 1 5677760 A C
Osa01LNT0008000.1 1 5678248 A C
Osa01LNT0008000.1 1 5678486 G T
Osa01LNT0008000.1 1 5678833 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0008000.1 1 nan Physiological trait Source activity RG532 RG472
Osa01LNT0008000.1 1 dn1a Morphological trait Panicle/flower G359 RG532
Osa01LNT0008000.1 1 sp1a Morphological trait Panicle/flower G359 RG532
Osa01LNT0008000.1 1 qTNSP-1-1 Morphological trait Panicle/flower RM1 RG532
Osa01LNT0008000.1 1 gn1 Morphological trait Panicle/flower G359 RG532
Osa01LNT0008000.1 1 gp1a Morphological trait Panicle/flower G359 RG532
Osa01LNT0008000.1 1 gw1a Morphological trait Seed G359 RG532
Osa01LNT0008000.1 1 qLS1-2 Morphological trait Shoot/Seedling G359 RG532
Osa01LNT0008000.1 1 qSS1-2 Morphological trait Seed G359 RG532
Osa01LNT0008000.1 1 qSSB1-1 Morphological trait Panicle/flower RG532 G359
Osa01LNT0008000.1 1 qSW1-3 Morphological trait Seed G359 RG532
Osa01LNT0008000.1 1 qFLL-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0008000.1 1 qFLP-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0008000.1 1 nan Resistance or Tolerance Lodging resistance R1944 C955
Osa01LNT0008000.1 1 ph1.1 Morphological trait Dwarf RM220 RM272
Osa01LNT0008000.1 1 qSTS-1 Others Others RM151 RG532
Osa01LNT0008000.1 1 nan Morphological trait Root RM7383 RM243
Osa01LNT0008000.1 1 nan Morphological trait Root RM7383 RM23
Osa01LNT0008000.1 1 Rf3 Physiological trait Sterility nan nan
Osa01LNT0008000.1 1 ppp1.1 Morphological trait Panicle/flower RG140 RM243
Osa01LNT0008000.1 1 prg1.2 Physiological trait Source activity RG140 RM243
Osa01LNT0008000.1 1 spp1.2 Morphological trait Panicle/flower RG140 RM243
Osa01LNT0008000.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0008000.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0008000.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0008000.1 1 qHUS-1-1 Others Others RM151 RM3746
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus