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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0096500.1

ATCCGCGCTCCGTCGCACGCGCGGCCCCTCCCCTTTCTCCGCCCTCCGTCGCGGCCGCCTTCCAACCCACGCTTCCCGCTCCCTTCGCCGCCGCCCCCACTGCTCGCGCGCCTCCGCCCCTCGCGCCGATCTCCTCCGCGGCGCCCCTCCGCCCATCGCAACGATCTACTCTGCGCCGCCCCCATCCCTCCCCTAACCATCGTCGACCCCCTCCCCTTCCAACCTCGCCGGCCATCCGCCCGTCGCTCCATGCCCGTCGGAGATCGCCGGCCGCCGGTTCCCCTAACCGCCGCAATCGACCCCATACCGGCGCCGCTGCACATCCTGATCACCGTCCAGTCGCCTTTCATCCCTCGGCCGGTCTCCGTCGCCTCGCCATCAGGAGCAAGAGGTTGAGGTGTCGAGCGCGGAGAGAGAGGCACCCAGGCTGACCTCGCTGGTGGCGACCTGGTGGTCTGTGTGACCTGCAAGTGTGGTGTCCACAAGGAGTTCGGCTTCGACCATTCCCACTGATCAAATTAGCCAGTCCCCTTATTCCATCCTCACTGTCAATGTCAATTTGTTCTTGCAACCGGACATCAGGCATAGAATGTTCCAACTATTGAGGAAGGTCAACGACAGGTTGAGTTTTGATCTAAGCATTACAAGATCCTTGCGTCTCACGAAGTAGCAGAATTACCTTTGCTGATCTTGCTGGTTCAATGAACTTGATCACGGGTTGGGACTTGGGAGTTGGCGACTGAGGCGCATGCAGGGCAGCGGCAATGACCAAGTGTTGGGCGCTCTATTAAGGACTGCAGGTTGTGGCAGTACTGCAGCAGCCAGTGCTTTGGTCCTAATCTTTGCTTACATCTAAGAAATTTCTAATGAGAGGAAGATTCTCATTTCAGGTGGAAAATTTTTGACATAGTAGTGCCTGCAATCAAATTTGATGATCAAAGTGCATGCAGGCAGGCAGGGTTCCTGACCTGGGCAATCAATTGAGGGAAATTAAAACTTGCGAGAGTTCCATTTTGAGTTAATAGAAAAAAAAGGATATTTTTTCTATTTAAATTGACATTTTCCATGAGCTAAACGTGAAGTAGCTTGATTGAATGCAAGATCTGATTGGCAGTATCACGCACGTAATGCTTATCGAGATTGTTGATCTTGCTTGATGAGAGCTTTTGATAACAAAGCTTTGCTGGGCATATTAATCACCAGACCAGTTTGATTGTTTCACGTTGGTGCTTGCGTCCTACCAGTATTATGTACTGAATAATGTTTCTTTGCTATGTCCTTCACTGATTTACTGATTTTGGTAAATTGAGGCTTCTACTGCGCTCGATCTTATCAAAT

Coding Potentia
Explanation CPC Score
noncoding -1.32217
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0096500.1 11 12849442 A C
Osa11LNT0096500.1 11 12850723 A G
Osa11LNT0096500.1 11 12851195 C A
Osa11LNT0096500.1 11 12851410 A G
Osa11LNT0096500.1 11 12851902 T A
Osa11LNT0096500.1 11 12852304 G A
Osa11LNT0096500.1 11 12852354 G A
Osa11LNT0096500.1 11 12852252 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0096500.1 osa-miR1423-5p Translation 4.5 17.098 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0096500.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0096500.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0096500.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus