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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0096600.1

CCAAAGAGTTCATTTTTTATTCAGATTCTAAGAACTTATAGTTATATAGAATAAAAAAATGAACTAGAAGACCAAAGCTAGAAAAGATTCTCATAAACTCGTTACCAGCATGCTGCTTTTCGGAATAAAACTCCCAAACATGCCCTTGCTACGAGCTGACTTCAGCTCGCCATTACTACGAGCTGACTGCAGCTGGCCATAACGTGCAGGGGCGCGGCTGGCAGGCCATTCACAGTGCACCCTGCTGGCATTCAGCCCGAGCGGTCCACGTAGTTGAGCAGCCAAAAATCGCCGCCACGTCCTAGTGTTGGCCCACAAATCGTGAGCGCATGTGACCAAATTTGGTCACCCGTTCTTCAATGCTATCGAGGTGGGGCGGCGTGGAGAAACGAGGGCACGACGCATTGCTGAGGCGTGTCTTCGCCGCGCGGTTCCTCCCGGCGCGCTTCATCCCCAAATCGCCCTCTCTGCGCGCGTGTTTCTTCTCCTCCCGCGCTCTCCTCAAGATCGCGGCTCGTCGCGCCGACGACAGGGAGGGAAGGGGCGCTGGCGACAGGGATGGGGATGGGAGAGAGGGCGCCGACGATGGGGAGGGAGGGGCGCCGGCGATGGGGATGGGGATGGGACGTTGTGAGGGGAGAAGAAACGGCAGCTTCAGGCTTATCTGATTGGGGAGAAATCTATACGTATTATCTGACTTTCGAGATACAAAGTGTAAAATTTGGATTTCTTTGTTAATAGAAAGATAGCAAGGGACTGAAATAGAAAATGCGAGGGGCTGAAACGAAAAAACCAAAGCTACGCATGAAGACCCTTGCACTGTGGGAGAGAAATTTTTTTTAGCGTGCGTAGGGAGGGGAAC

Coding Potentia
Explanation CPC Score
noncoding -1.16163
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0096600.1 11 13207711 T C
Osa11LNT0096600.1 11 13208101 A G
Osa11LNT0096600.1 11 13207460 T C
Osa11LNT0096600.1 11 13207209 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0096600.1 osa-miR414 Cleavage 3.0 15.897 1 21
Osa11LNT0096600.1 osa-miR414 Cleavage 5.0 21.899 1 21
Osa11LNT0096600.1 osa-miR1427 Cleavage 5.0 24.809 1 21
Osa11LNT0096600.1 osa-miR812f Cleavage 4.5 24.836 1 24
Osa11LNT0096600.1 osa-miR2103 Translation 3.5 18.862 1 22
Osa11LNT0096600.1 osa-miR2918 Cleavage 4.5 18.334 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0096600.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0096600.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0096600.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus