>Osa11LNT0096800.1

ATCTAGCTATGGTCATATTTCGTTTTGTTCCTTTTGTCAATTCGATCACCCCCAACAATTTTACAACGATGTACAAGTAGAAGAAGCAAACCAAGCGTCTGCAATCTTGCGTGGCTAGCAGCAGCGGCGGAAGCAACTGCAGGAACAGCAAGAGGAAGGGCTTGGAAGCTTGAACGCGCAGCACTTGGGAAACCTGCACTTCGGCAGCTTGATCTTCCACGAGCAGCACCTGCGGCGGTTCCCGTGGCCACCCCTCTCCGAGCGGACGAGCTTCTTCAGCTCGGCCTTGGTCTTACGCAGACGGGCCCCGTATTCCTTCTTCCACGTCCCGAACTGCCGCTTCAGCTTCTTGAGCTCGTCGACCGACTTGGCAGTCGGCGGTCCCGCTTCGGTCACCGCACGCGCGCGGTGCTCGAACGCCTCGCTCTCCTGCCGGAGCTCCGTGGCCAAGCGGCTCACGGCATCGGTTTTCCTTTCGTCGACGACTGCAGCAACGTTCGATTCGCGGCCACGAGCCTGTTGCCGCGTCACCGATGCTTCCTCCTCTCGCCACCCTGACGACTGAGCAGGAGCACCACTAGTGCCTGATAGTTCCTGCCTGTGGTGCGTCCTTGTCGTCGATTCACCGGTTCTTCCAGCGTTGTTCTGAGCGATCTGCATCGTGGTGATCTGTTTCCGCAGCTCCTCCTCCACGGATTTCATCCTCGCCTCGCATTCCGAGAGCCGGGATTCGTAGTGCTCAACCTGTTGCCTCAGCGCGGCTATCTCCTCATCTTTCTGCCTCACCACGTCGTCCTTCTGCTTTACCGCCTCTTCCGCCACCGTGGCCCTTCTTTCCAGCACCGAATTGACCGCAAGTTTCTCGTCCACAGCATAGGCGGTAACGATGGTGACCGGTGAACCCAAGGGGGAGGGGAACCAGGCCTCTGCAGAGATGGCGGCCTGCCCCTCACCGTGGGGCGTGTGGGCAGCGCTGGAGGCGCCTCCTCCTTGGGCTTTTCCTCCGGCTTTCCTACTCCTCTCTGCATGAGCGCATCCAGCATCACCTCCATGGAGCTCAGCGCTGAAGACAGCGTCGACGATGTCATCGCTTGCCACGAGCTCAAGCCCTCAACGCCAAGGAGACGTTACGCCGATGCGCGCGCCTCCTGCGTGCATGTAATCCAGCTTCATTTGTCCATGAAATTTGATGGAGTCAGGGTTGAAATTTGATGTAGTCAGGGTGGAGGAGAAGGGGAGGCCCGAAGAACAACAGGCAGGCGAAATCATGTGGTGGCGAGGCGTTGCCCAACGGCCTCGCCGACGCTGCCTGCCTGCCTGTTCCTAGGTTCGTTGC

Explanation	CPC Score
noncoding (weak)	-0.899034

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0096800.1	11	13377957	T	C
Osa11LNT0096800.1	11	13377958	T	G
Osa11LNT0096800.1	11	13378694	G	C
Osa11LNT0096800.1	11	13378731	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0096800.1	osa-miR5796	Cleavage	5.0	24.55	1	21
Osa11LNT0096800.1	osa-miR5837.2	Cleavage	5.0	20.919	1	21
Osa11LNT0096800.1	osa-miR159a.2	Translation	5.0	22.25	1	21
Osa11LNT0096800.1	osa-miR160f-5p	Translation	5.0	19.653	1	21
Osa11LNT0096800.1	osa-miR2090	Cleavage	5.0	18.239	1	22
Osa11LNT0096800.1	osa-miR5800	Cleavage	5.0	19.669	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0096800.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0096800.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0096800.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus