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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0096900.1

CTCCTCTTCTCTTCATTCTCTTCCTGTTCCTCTTCTTCCTCCTCCCATCTCTTCGTCTTCCTCCTCTGGATCCGCCCCCTCCCCTCTCCTCCCCACCTCTCAGACGGTCGGGCCACGGCGGCCGGGCGGCACGAAGGCGGCCTCGCGCGGCGGCCTGGCGGCAGCGAATCTGGGAGGGGAGGCGGCCGGCCGCCGCTGGATCCGAGAGGGGCAGATCTGCACGTATTTTTTTTCTTTTTTCTTCTCTGTGTTGAATGCAATCTGTGATGAGGATGTTGAATGATTCAATCTGTGTTAATTCGATCTATGCTGCGAATGAACTATATTATTATGAATGATTTGGGACGAAGTTGTTGTGAATGATTTGGGTTGAGAATGTTGTGTTGATTTGGGATGAAGTTGCAAGTTGTTGTGTTGATTTGGGATGAAGTTGCTGTGAATGATTTGAGATAATGGGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.738981
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0096900.1 11 13631556 A G
Osa11LNT0096900.1 11 13631972 A T
Osa11LNT0096900.1 11 13632012 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0096900.1 osa-miR5539a Cleavage 4.5 14.874 1 22
Osa11LNT0096900.1 osa-miR5539b Cleavage 4.5 14.874 1 22
Osa11LNT0096900.1 osa-miR167a-3p Cleavage 5.0 13.271 1 22
Osa11LNT0096900.1 osa-miR167a-3p Translation 5.0 8.351 1 22
Osa11LNT0096900.1 osa-miR164c Translation 5.0 15.723 1 21
Osa11LNT0096900.1 osa-miR2097-5p Translation 3.5 5.243 1 22
Osa11LNT0096900.1 osa-miR2097-5p Translation 5.0 20.326 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0096900.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0096900.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0096900.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus