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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0097000.1

CCTAAAAGTAGGGGTAAAATCAATATTAGACATCGAAGTAGGGTTAGAAACGAAATTGCCCCTAAATTAACTCAGTTGGAATATTGAGCCAATAATAAATAGCATGTTCAGATGATATTCCTTTTCAAATGGCAGCATAGGATTTGGCATAGCATCATCAATTGAGAAACTCCTTTTAAGTACCTAGCTGATAGGGAACTTAGAATTAGAAGATGAATCAGTATTCATTCCTACAGTAAAAAGTCTTGTTTTTCCAATGGCTTTATTAAGAGTTACTGGATGATCAATTGAGTCTATGTTCATGTTCTGAGAAGCCCGGGATTCAATAATGAAGACCAAATATAACAACTGAAGTATATTCACACAATGGGAATTGCTTGAACTGAATTCACACAATGGGAATTGCTTGAACTGAATATAAACTTAACAGTAAAAAAAGGCTGGAAGTGCTACATATTGGGATTATCTCTGCAGATCGAAAATCGACAGGAGCTGCAAAATACACTCTAGAGGAAGGCTGTGGGTGACGCATCACGAAATACCGTTCTATGGATCCCGTAGGAGAACACACAACCTTGTAGAAGTGAAAGCTCGGATGAAACAAGGATGGTAGAGAACGACGAATGACATGAGCTTTTGTGGATCGAAGGCACATTATAATAAGTGAATGATGATGATGATTTCGCGTAACGGACACTGGGAGTAACTGCGTTAATGTGAGCCATCAAGACGGCATGCATAAAGAATCGCCGGGGAGGGGGAGGCGGAGCGGCAACGTCTGTGCGCAGGGGGTGGGGCAAAT

Coding Potentia
Explanation CPC Score
noncoding -1.4461
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0097000.1 11 13674346 T C
Osa11LNT0097000.1 11 13674348 A G
Osa11LNT0097000.1 11 13674725 G A
Osa11LNT0097000.1 11 13674946 T C
Osa11LNT0097000.1 11 13675126 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0097000.1 osa-miR5540 Cleavage 5.0 13.373 1 21
Osa11LNT0097000.1 osa-miR396a-3p Cleavage 5.0 14.524 1 20
Osa11LNT0097000.1 osa-miR396b-3p Cleavage 5.0 14.524 1 20
Osa11LNT0097000.1 osa-miR1857-5p Cleavage 4.5 17.003 1 21
Osa11LNT0097000.1 osa-miR396f-3p Translation 5.0 15.511 1 24
Osa11LNT0097000.1 osa-miR396f-3p Translation 5.0 11.817 1 24
Osa11LNT0097000.1 osa-miR2928 Cleavage 5.0 14.779 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0097000.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0097000.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0097000.1 11 nan Morphological trait Seed RM332 RM229
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus