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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0097400.1

AACCACGAACACAATAAATATTATTTAGAAATTCGCAGAAAAGAATAATCAGGTAATACAGGATCAGAATATATGCAACCTTCAGTAATAGATAAGACGATGTGCCAAACAACTAATGGTGATGATGTGCTACAGTGCTTAATCAGAATTATAAATTTGATCTTGTGTCAGGATTTCTGGAACACCTTGAAACGTAGTGATAATCTGCTACTACTTGATGTCTTGACTGTTCCAACTCTCTGCGTTTAATTCAGACCTAAAAGGCTGAGACAAAAGATTGATAAGATAAGTCACAATGGTAAGAACAAAATGAAAAATCCCTACAGTTTACGATTTCAGAATGTCGGTAAACTCGTAAACAACCAAAAATAGATTTTATGCAACCAATATTTACATGTAAAAGAAAGAACTGAAGTAAGAGTTAAGTGGACGCAAAGCAGATAAATTTTGACATTCGCATCAATTGCTGGAACACCTAAACACAAACCCTCTATTACTCTTTTGGAATCACAAATATGTCATCCAATGAACTGTGCAGGATAAGAGAATGGAAACTGGGGGTGATGGCTGTATCCATGAATCCCTACAAAGCAGATCAAACAAATTCACTTAGCCAGTGCAAAGTTAATTTCTGCACACAGTGATAACAAAACATCCTAACAATGTGAAAGAAACTTCGAGCGATTAGACGAAATTAAAGCATGCTTCAAAAAAAAAAGGATTGGCCGAAGTATTAGTTAGAGTCTCAGAGATAAGACAAAAGCAGTGCTTCATGCATTAGGGATCTACTCCATGAAGTATAACTGATGAAGGAACATGGGCCAGCGAGCAAACCGTAGCGTGCATATCTGTCCATGGATCGTACAGCTCAAACACCTCCGCAAACGTAGCGCAGCACGAGTCAATCACAACCTTGGTTCCAAATTTGAAGAGGAATGATGGGTCCGCTAACATTCAGTTGCGGAGCATCAAGAATGCCCGGATCATCGCGGCTAGAGGCCATGGTGCTGCCTGCAGATCGAAGTGGTGGAGCAACATGACTTCCCGGATGCTAGCATCCTTGGCCGCCCCCATCATGTCGGCCGGGAGCGAGACACCGCATGCCGCGGTGAGGCGCAGCACCTCATCGAACCCGAGCAGGGGCCCGAACTCGGCCTCCTCATAGTCGTTGTCGCCGCCATCGCCGTCGCCGCCGCCACCCTTGCCGTTGTTTCCTCCGGAGCCGCTCCCGCGGTCCCCCACGGCCGATCCTTCGCCTGTGGTGGCACGTGGGGCTTGTGACCCAGAGCAGGAGAGGGAATGGTGTTTGGGGGGGGCAGTGGGGAGAATAGCCTGGAGGAGAGCTGGTGGAGGGGTCTTTGCTCGTGAGAGGGGTTTTGATGGGGAGGAGGAGGAGATCACGGCGGCGGCAGCGGCGAGGGAGGAGAGGGGAGGGGAGGCAGCGAAGGCCATTGTAGGGGCGGTTGAGGCCAGCATGGCGCTAGGGCTCCCGGCGCATATCTCCATCTCGCGATACCTGCAGCCGACGCTACAGACGCGCGGCTCCGCGGCGTGGCTGGTGCGTGCGGGATGAGGAAGGCAGTGCGACGCGGGGAGGAGAAGCGAGCACATGCGCAGGGGAGAAGGAGAAGCGAGTGCGCCGGCTAGCGGGCCCGCTGCGCAGCTGGCACGCACGCATGCGGGCGGGGGAGGGGAAGCGACCGCGTCCGGCGGCGGCAGCGGCTGTGAGCGATGCGGATGGGGAGAAACCAGGAAAGAAATGTGGGCTGGGCTT

Coding Potentia
Explanation CPC Score
noncoding -1.02266
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0097400.1 11 13969725 A T
Osa11LNT0097400.1 11 13970416 A T
Osa11LNT0097400.1 11 13970876 A G
Osa11LNT0097400.1 11 13970995 C T
Osa11LNT0097400.1 11 13971100 A G
Osa11LNT0097400.1 11 13971365 G T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0097400.1 osa-miR6254 Translation 5.0 15.863 1 21
Osa11LNT0097400.1 osa-miR1437b-5p Cleavage 4.0 22.952 1 21
Osa11LNT0097400.1 osa-miR156f-3p Cleavage 4.0 21.791 1 22
Osa11LNT0097400.1 osa-miR156h-3p Cleavage 4.0 21.791 1 22
Osa11LNT0097400.1 osa-miR156l-3p Cleavage 4.0 21.791 1 22
Osa11LNT0097400.1 osa-miR1431 Translation 4.5 12.831 1 21
Osa11LNT0097400.1 osa-miR1850.2 Cleavage 5.0 14.719 1 21
Osa11LNT0097400.1 osa-miR2097-3p Cleavage 2.0 24.208 1 22
Osa11LNT0097400.1 osa-miR396f-5p Cleavage 5.0 19.035 1 22
Osa11LNT0097400.1 osa-miR5160 Translation 5.0 18.265 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0097400.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0097400.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0097400.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus