>Osa11LNT0097500.1

ACTCCACCATCCCTCCTCCCTGCCTATCTTCACTCTCCCCCTGCGACCGCCGCTAGATCTGGATGCGCCGACTTCGGCTCAGGCGACGGCCGACGGCGTTAGGCGCGTTGGCGGCTTGCTGGCTGGCGGGCTGAGGGTGTGAGGTAGGCGGCGTCGCGAATCGCGGGCGCGCACAGCGGCTGCGCCGTGCCCATGAGCGATGGACGGAAAGGCGCGGAGGAGCCTGCAACCAGGCGGGTGGCGGCCAGGCGAGCGGCCGACGCCCGTGAAGGCTGCGTCTGGGGCTCCACCAGGAATCGCCACCAATAGCCGGCTCTCACGCTTCAGATCCGAACGCCAGCTGACCAGCGCCACCCTCTGGAACTGGAGAATCCCAGTCACTGCTCGTGCGCACTGCTGGCCCGGCCTCTCGACGTCCTCCCTTCTGGCAGCCGCTGCTTGATTGCTTGTCTTTTGCAGTGAACTATGATTTTGGTGTTGCGGCCTACTCAGTGCTCACCCATCACACTCATACCTGAGAAACTGGTGCTATGAAAATCTGCATATTGGACTGTTTATGCAATCATTTCAAAAGATCATTTATGTCCTGATGCCGCAGTCATCTCTACTTCACTAGTTGAGTTAAGCAATCGCTAATTGCTTGGAAAACTAGGAAGCACAATATAGCTGAAGGTCCAGACAGGGGTTTGACATCATGGCTTAGAGCAATAGTACCATGCCATTTTAGAGTGAAGTAGTATTCCCAGGATGCAAAAGAGATACATTGAAATTTGCCTAGTAAGTCCCTTTTTTTGGACTGCTTGCGATGCCGTTCATCTAAACTTATGTCTGGTTGAACGGCTTTTGGTTTCTAAGCCTGTACTTGTAGGAAGTAGTGTTCAATTCGATCTCAGTTGTAGCTGTTTATGATATTTGTATTGCTATTGTTTGATACCATATTGTTGTCAAATTGATTAATCGAATGAATATGTATGTCGATGCATTTGAAT

Explanation	CPC Score
noncoding	-1.16021

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0097500.1	11	14161282	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0097500.1	osa-miR5791	Cleavage	5.0	17.498	1	21
Osa11LNT0097500.1	osa-miR812s	Cleavage	4.5	17.684	1	24
Osa11LNT0097500.1	osa-miR5799	Cleavage	4.5	17.684	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0097500.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0097500.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0097500.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus