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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0097600.1

AAGGTCAGATTTTCTTTTTTTACTCTTAAGCCTTAACTAGTGGAGTAACTGCTATGTATGCCCCATCTCCTGCAAAAAAAATTTTCTGAATATGCCGCCCTTTTGCATATTTGATCATGTAGGCTAGTTTCATTGGGGATGATTTGTTGTTGGGTATTTTTATCAGAGCTATGTAGATTGAGTATGACAATTGGGTATTTTTATCAGAGCTATGTAGATTACTTATTTGTGTCTTTTTCTCCAATCTGCTTCACCAAGAATGGAGTTAGGGAGGTAGAGCCAGAGGCAAGGAGTAGGAGGGAAAGGGGATGGTGCCTCTTCTTGGCTGCTTCAGTTCTTTTTTCCTCTCGGCCACAAGCAAATCAGCCAAGACTCTGTTTTAGATGGTATGAATTTACAGTCCCAGCATGTGCAAGTTGGTTTTGATTATTTGATATCTTTGTTAGGAACTATATCGCTTAGTTAATTATAGTAAAGCACCTTGGATGATGGAAGGTCACCTTTATTTTATCACAGGACATTTTATTTTCCAAGCAACCAGGCAATAGATTTCTGGAGTTAAAAACTAACATTTTGTTATCGAACAACAAAATGCTGGCTCTTGGTTCTTTCTATAATTTTGTGATATCATGTAGCTGGTTTTCCATTCTCTATTCTTCAGACGTGTTGACATACAATATACTTTCTCTTTTTTTAAATATAATGGGGAGAATTTCATTAATAAATGAAATTGCACTTGACCTCTGATATATTTTGTCAATGGAATTCAGAATTTGCAGTAGTTGGTTCATAAGGAGAGCTTATTAACTCTGTATCTAAGTTGGATTGCTCAATGATTAGGCGCCGAAGGCCACGGTGAGGCAGGGTTCGACAGAGGGATAGCCGTGACACTGTAGATGAGGGCACCAGAGGCTGCCATTACGCCGTCGAGGAGGTGGGGGATGCTTCCATGGTTTTTCTCGCACCGGTGGGCGAGGCAGCCGTGATATCTCTCCTGGATCTCAGTAAGCAAGCAAGCACGTTCCCAGGGCTATCGAGGAGGCAGTCACAATGACCCTGATGGTCTTCAGCGAGGCATATATGAATTCCTTTGTCGCAGGTGGCGATGCAGTCCCGACGCTAATCATGTTGATGGGCGAGGTGGTCAAGGCCTCTCTCCTTTACGAGGTGGGCTAATCGTGTCAGTTTTTTTTCTACATCTTTGTGGTAGAAACTAAGAAATCATATTATTTAGGTCAAAGAAATATAATCTTGTAATCTGAACATCTAAAGATATGTAATCTGCATATGAAGATTACAACACTGAAGCAAATTACTACTGACGAGTCATATGTTTTGTCAGTTGCTAACATTTGTATTTTATCAGCAATAAGACTGCATCACCTCATAATTTTAGTGAATATTACTTATTTTTGTTA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.979814
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0097600.1 11 14128338 T A
Osa11LNT0097600.1 11 14128476 C T
Osa11LNT0097600.1 11 14129405 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0097600.1 osa-miR6248 Translation 4.5 13.375 1 21
Osa11LNT0097600.1 osa-miR167a-5p Translation 5.0 22.718 1 21
Osa11LNT0097600.1 osa-miR167b Translation 5.0 22.718 1 21
Osa11LNT0097600.1 osa-miR167c-5p Translation 5.0 22.718 1 21
Osa11LNT0097600.1 osa-miR395u Translation 5.0 19.779 1 21
Osa11LNT0097600.1 osa-miR167d-5p Translation 5.0 22.718 1 21
Osa11LNT0097600.1 osa-miR167e-5p Translation 5.0 22.718 1 21
Osa11LNT0097600.1 osa-miR167f Translation 5.0 22.718 1 21
Osa11LNT0097600.1 osa-miR167g Translation 5.0 22.718 1 21
Osa11LNT0097600.1 osa-miR167h-5p Translation 5.0 22.718 1 21
Osa11LNT0097600.1 osa-miR167h-3p Translation 4.5 18.092 1 21
Osa11LNT0097600.1 osa-miR167i-5p Translation 5.0 22.718 1 21
Osa11LNT0097600.1 osa-miR167j Translation 5.0 22.718 1 21
Osa11LNT0097600.1 osa-miR529b Cleavage 4.5 11.004 1 21
Osa11LNT0097600.1 osa-miR1855 Cleavage 2.5 23.352 1 21
Osa11LNT0097600.1 osa-miR1860-5p Cleavage 5.0 14.6 1 21
Osa11LNT0097600.1 osa-miR1860-5p Cleavage 4.0 11.116 1 21
Osa11LNT0097600.1 osa-miR5492 Cleavage 4.5 20.787 1 21
Osa11LNT0097600.1 osa-miR5492 Translation 5.0 10.704 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0097600.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0097600.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0097600.1 11 nan Morphological trait Seed RM332 RM229
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus