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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0097700.1

CCCTGAAACTCTATCTAAAATAGCGCATGGGGGATAAAATGGTAGTATATAAGGTTGCAGGTTTCCTTACTGTGAAAGGAGGTGTAATTTTTTGCACTGTTGCTTCTCCTTGACGATAACCATCACGGGTCCCCGATAGCAACCGCCCACCATGGTGTTTTCCTCGAGTGCCCCCTCCAGCCTTGGGGCAGCAGGTTTGTGCCTTCTGCAGGTGCTACCCATCCTCAACATGGCATCTATGCCATTCTCTTCAATGTTGGCGGCGGCAAGGCAGCTTTTTCTGTTGCTGCTCCCTTGATACAGGAGAATTACTGTAGTACACTAACTTCACCCACGCACTTGCTCGACTTCAGCCCACAGCTCATTGACTTGCTTAGGCATGCAGTTGTTGCCCCCCTAGCTAACTCCTCGCTTTGCTCATACAAGTATTGCTTCTGGAGAAAATTTTGTGAGGTCTTAAAGATACCTGAAATATGAATTGGAAAGTAAATCAAGCACTTCTTCTTGTTGGTTTACCGCATCTTATAGGCACATCGATAGATATGTTGATCGGTTGATTTCAATTGGCGAGATTATTGCCTGCTTGCTCTAAAATCAGGTTGGAAGTTGAAAGCTGAATCAAGCATTTGTGCAGCTGGCTCGTGGTAGACTGAACAACGATGGCCATTGTCTTCACTCTGCAACTCTGCATGCAAGCCGCATCCATGGTGTTCACTCTGCAACATGCGCCGGCGTGATCTAACACGATGCCTCGATAGAGGAATTCTTTGATTCCAGCTGGCTGCTGCAATAAAATCAGAGCATGAGATGCGCAAGAAGTGGCGATAGAAATGAAGACCTGGGTGGTTATTCAGATAAAGAATAGGAAGCCGAAAGCAATGGAGGAGGCCGCCTTAGCCGGCGAAGTGAAGAATGTGCAGCACTGCGTGCCCGCCGATCCGGACGTGATGGAGGAGCGGGAGGCCTCGCCCCCGGCCGTCTTGGCAAACGTTCTGCGGCGGCGGGGTGACCGACTGTTGCTCATCCTGCAACCTCCTATTGCTGCTTTGGTCGCCGGATTTTTGCCGAGAAGACGAACGGCGGTGAGGGGGTGGCACCACCCGTGAGAGAAAACTGCTTGGCCGCCGCGGACCGCGGAGAATATGCACTCCCAAACGTGGATGTGGGCGGAGCCGGGGGCGCAGCGAGGAGGAGGAGGGTATGGCGACGCTGCGGGGAGGGAGGCACGGGGGTGCGGTGGGGGGAGGAAGAAGGGGCTAGGGCCCCCAGGGAGGGAGGCGGCGCGGTGGATGCGGGCGAGCAGGGGCGACGGGGCGGCGACGACGACGATGGGGAGGCGGTGCGGCATGGAGGAACGGGGAAAGGGAGGCAGTTTTTTCGCGAAAAATGGGAGGCAGAGCGCGTGGGAGGATCGTCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.884565
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0097700.1 11 14184781 A T
Osa11LNT0097700.1 11 14185274 C T
Osa11LNT0097700.1 11 14185666 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0097700.1 osa-miR5793 Translation 4.5 16.463 1 21
Osa11LNT0097700.1 osa-miR6253 Cleavage 4.0 15.421 1 22
Osa11LNT0097700.1 osa-miR408-3p Translation 5.0 22.847 1 21
Osa11LNT0097700.1 osa-miR444a-3p.1 Cleavage 4.5 24.962 1 21
Osa11LNT0097700.1 osa-miR529a Translation 4.0 21.585 1 20
Osa11LNT0097700.1 osa-miR444d.1 Cleavage 4.5 24.962 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0097700.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0097700.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0097700.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus