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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0097900.1

GTGCCTCGTATCTATACAACATGTCAAAACTTTCATTCCAGCTCCCATACAACTTTGTAAGAGCAAGCTCTCTACCAACAAACACTCTTTTGTAATTGATCAAAACCTTGTGTGTCTCATGAATCCTTCTTTGCAATTCCTTTGCTCCAACAGTAGCATCCTCCAACAACCAATCTTTCACCTTCTCACAAATCCAAAACTTGCTTGCAGCCTTGATAGTTTCACTTCTTCTAGTACTTGAGCATCCATGGGCAACAAGATTAGTTTTTACCATGATGGTGACACCATCAGCAACCGCAGATGCATGAATCCTCCATTTGCAGCCTTCAGCAGCACAACTTGCAGTAAATTTCCCTGGTTCACTCTTGATAATGTTATATTAAAATTCCTTTTTTATTGCATGTTGTGCTATTGCCAATCTAAATTCATCAATGTTAGGATAAGTGCTGCCTTTTATCATTGGTGGATCATTTTTATCATAGGTTATGGTAGGAAGATGTTCTGGCATCTCATCCAATGCCATCCCCTCATCCTCAGATTCATCCACACACTCATCCTCAGATGCATCCTCAGTTTCATCCTCAGATGCATCCTTAGATGCAAAATAAGATTCATCCTCAGAGTCTTCATTGACAACCTCTTTACCTCTAGTTTCCTCGGCATGACCAGCAGCAGCTTCCTCAACATCATTTAAGTACATGCCCTCATCATCCACACCAACATGCTCAGCCATTGGAAAAAGGTTTACTAAGTATGTGTTGGATGGCACAGTGACACGAGAAGGTTGAGTGCTGCTGCTAGGTTGGCTGAAATCCACTTGAGAGGGAATTGCCAAAGGAGTATCGAACACGTCTATGTTTACTTTATCAGGAGTGTGGTCTAACTCATCAATATTTTCATCAATACCATGTATACGAATAATCATTGGAATCACCTTGATATCAATGAACTTTTCAAACATTGCTATCATGTCCTGATCAGTTTTGACATGATGAGAGGTTTTATCAACCAAATCCATGTAGTCAATTGTAACAGTCTCATTTGGCCCCCATGGATATGACTTTGCAATGTCATCAACAAAGTCTTTGTAGCACAATACATTTGAGTCTACCACCTTACTGAATATAAACCAATCATATTCCACCCTAGCATTTTTTCGATCCCCCGCTGGTTTAATTTCCAACAAATATGTAGCTATGGGGTCCATCCCTATTGGTAGCCATGAAGGAACTGTGCTAAGCCTTGAATTTGCCATTCGAGGTGGATGTGGTTCACAACTGTCACACACAAGTTCTCTAAAAAAACTCTCACACACAAGAGAAGGAATAAATTACCATTACTAATTAACTATAGGAGGAATAAGAAATAAAGTACAGATCTACATTAATTAACATCTTTAAGTACAGTCTAGATTGAAATAAACTATGATAGGTGAAAACTACTAGATCTGTACAGGAGCTAAGCACTACTGCATGTAATTTTGGTTCTTACAATATGACCAAGCTTTTTAACCAAGGTTGTCATTACGCTAATTTTCTCATGATAATGGGGAAAGGCACACACTAAGTACATGTCATCACATGGCCAAATTACACAGTAAACAGTACCCATGGCACATCACACTAAATGTCTGAAAAAGTGAACGTAACAGTTGATCAATACCTGCACATCTTGCATTCCCTTCTCAATATTAACAGTCAAGAAGAAGGGAAGAAATCATACACATCTACATAGGAAAGAAATCAACCTAGTCGGATGAATGGGAGCAGTAGGGGATGGGAGCTCGGGGGCCAGCAGCAGCCGCCGCTGAGAGCTCTGTCAACAAGGCGGCTGCTGCCTGGACAGCACCTGCAGCGTCGATTGGCTGCCGTCGCTAGGGCCGAAGGGAGCTGAAGCCGCCGTCGCCGGAGCCGATGGGAGCCGAAGCCGCCGCCGCAGCCGCCGCCGACAACGACGACGAGAGCTCGAGGGCGACAGGACCACCAGCACCGAATCGACGGCGGGGACGGGAGCGCAAGGCCGGTGGCCACGGGAGGAATGTTGGCGACGGCCGCGAAAGGACGGCGGCGGCGACGCACGGCGCCGCCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.914102
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0097900.1 11 14314615 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0097900.1 osa-miR5827 Cleavage 4.0 9.256 1 21
Osa11LNT0097900.1 osa-miR5827 Translation 3.5 14.721 1 21
Osa11LNT0097900.1 osa-miR5827 Translation 5.0 20.265 1 21
Osa11LNT0097900.1 osa-miR535-3p Cleavage 3.0 17.787 1 21
Osa11LNT0097900.1 osa-miR1877 Cleavage 5.0 20.172 1 24
Osa11LNT0097900.1 osa-miR1320-5p Cleavage 5.0 9.496 1 21
Osa11LNT0097900.1 osa-miR2105 Translation 3.5 21.109 1 20
Osa11LNT0097900.1 osa-miR2867-5p Translation 2.0 22.348 1 22
Osa11LNT0097900.1 osa-miR1863b.2 Translation 4.5 19.013 1 23
Osa11LNT0097900.1 osa-miR5519 Cleavage 4.5 21.252 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0097900.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0097900.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0097900.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus