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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0098200.1

GAAATTGCCTGACCTAAAGCCAGCCTGAGACTAACACAGGTCTTGTTTGGTTGGTGCCCTTAGATTCCAAACCCTTCGCCTGCCCTGACGCAGCCCTTCCCGTCATTAGCGTGAGCTAGGCGACCGAAATCGATCGCCTGAGCTCCAGGCAGCAACAGCGATACATACTTACCATCCTAATCTTTATCCAAAGCGGCCACGCGACGTAGATTCCAGGAGCGAAGCTGCGCTGCTTCCGCGAAGCCGCCGCCGACCGCCATCTTGCCGGATCCTTGCGAAGCCGCCGCCGCCCGCCGTCTTTTGTAATCCCTGCGAAGCTGTGCTACTCTCGCTGGCGTGCGAAGCCACCGCCGTTTTGCCGGATCCCTGCGAAGCTGTGTTGCTCCCGCCGGCGGGTGAAGCTGTCGCCGTCTTGCCGGATCCCAGCATAGCAGCACCGCCCATGCTAGATGCTGCCCAGGCTGCCTTTCGTGCAAAATAGTAAGCAGATCGATTTGCAGGTTGCCAGATGCATTTGCACATCTGGGCAGAATCATCTGAAGGTTGTGCTCCTGATGCACGGATTTGGGATCTATTTGACTCTTCGATTGCGTTCTCCTCTCTCTTTTTTTCCCTGCTTTTTTTTCTAGATTTTTATCCTCGTTATGTATGCAAGATTTGTGCTTGTACATGGGAAGTTGGGTTCATAAATGGATCTTGGCAGGAGGTTTAGATGCAATTTGTGGCAAGATTTGTGACGGCCATTAATAATTGATTTAGCTGTATAATAAT

Coding Potentia
Explanation CPC Score
noncoding -1.07689
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0098200.1 osa-miR444a-3p.2 Cleavage 4.0 18.662 1 21
Osa11LNT0098200.1 osa-miR529b Cleavage 3.5 8.367 1 21
Osa11LNT0098200.1 osa-miR1431 Cleavage 5.0 18.186 1 21
Osa11LNT0098200.1 osa-miR444b.2 Cleavage 5.0 18.662 1 21
Osa11LNT0098200.1 osa-miR444c.2 Cleavage 5.0 18.662 1 21
Osa11LNT0098200.1 osa-miR444d.2 Cleavage 4.0 18.662 1 21
Osa11LNT0098200.1 osa-miR444e Cleavage 4.0 18.662 1 21
Osa11LNT0098200.1 osa-miR444f Cleavage 4.5 18.662 1 21
Osa11LNT0098200.1 osa-miR1858a Cleavage 3.5 13.043 1 21
Osa11LNT0098200.1 osa-miR1858b Cleavage 3.5 13.043 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0098200.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0098200.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0098200.1 11 nan Morphological trait Seed RM332 RM229
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus