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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0098400.1

TCTCATCTGTTTATCTATCTATCTAATCTATCATGTATTGCCCCTGAACCCCATCTGAACCACGCTCTGCAGGTCATCCTCCCACATGCAGCTCCCTGCCTGAGAATGAGCACTGTGAAACCCATCAAGTGAGGGAACTGGGATGACATGGTGGTTTGCAAATGTTGGCGCCGTTTCTAAGTGTTTGGTGCTTGTCACCACGCTCTGCATTGCTGTCCCTTGCGACGACGCGTAGCAGATCCCCGGGCTTGCGCCCTCCGGTGAGTAGGATAGCGGTGGCGGTGGCGGTGGCAGCGACAACGGCGCGGGCATGATGGGATCACTAGCCTGATCTTTTGGGATGAAGTTGTCGACGTCGAAATCCAGCTGCGGGTTGACGGTGGAAAGCTTCATTGATAGGAACTCCACTTGCCGTTGCAACGACTGGACGTAGTTTATGATCTCGTCAAGCATCACTGCCTTGCCTGTCACCTTGTTGCAGCCAGGAACGAGGTCTTGAAGCAGCTTCATGCGCTCGCTGATCTTTTCTCTCCTCACCCGCTCGGCGAGGCTGTGGCTGTCGGTGGCCTGGCCGCGGCGAGCGCGCACGTGGATGTAGTCCTTGGGTGGCTCGCCGGCGGCGTCGAGGACCTTTCCCTTGCCATTGCCGCCGTGTCCCGCGTCGCCGGCGACCGGCTTCGTGTCCTCGTCTCCGGCGGCGTCCGCGGACAGCTTGCATTTCTTCGCCTTCGTCCCCGGCTCCGGCGACTTGGCAATGGTCGTCGCTGCGTCCTTGCCTCTAGCCTTGGCGCACGGCGCCTTCCGCTTCCGACAAGGAGCGTCGCTGCTCGACCCGTCGCTCGCCGGTAGCTGGTGGACGCCACCGGCCGCCGCCGTCTCCGCGAGGAGGGACTGGCTGCTCGCCGCGCGTGAGAGCTTCCCGCCGCCGTGTCCGGCAGCCGCCAGGCACGACATCCGCGCGGCGCGCTCGGCGATCATGGCGTCCGCCGCGGCGAGCAGGGAAGGCACAGGCGGCGCCGGCGCGGGCTTGCACGGCGAGCCCACCGGCGTGCTGTAGCACGACGCGTACCGCGACGACGACGGCGGCGACGGCACCCCGCCGCCCCCGAGCCCGCCGCCGCACACGCCGCCGAGCCTGCTCGCCAGCTCGTCCATCAGCGCGGCCTTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.933632
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0098400.1 11 14569585 T C
Osa11LNT0098400.1 11 14569847 A T
Osa11LNT0098400.1 11 14570042 A G
Osa11LNT0098400.1 11 14570138 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0098400.1 osa-miR810b.2 Translation 4.5 22.419 1 21
Osa11LNT0098400.1 osa-miR1864 Translation 5.0 23.135 1 24
Osa11LNT0098400.1 osa-miR5073 Translation 5.0 16.697 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0098400.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0098400.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0098400.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus