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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0098500.1

CGAATTAAAAAATCGTCCCCCAACCACAAAACCAGATATATAATATCCCTTGACTTACAAAAACATTCACTTTAAATCCTTAGGTAGTTTTAAACCCGGTTTTATCCGATGTGGTGACTGAGTCAGCATGGGACCCATATGGGCCCCACGTGTCAGTACGCCACGTCACTCTTTCCCCTCTCTCCCTTCCTCATCTCTCTCTCACTTTTATCCTCTCTGGTATGGTGGCCGCCCGGCGGGTGGAGAGGAGGTCGCCGGGCGAGACGAGGGAGGAAATCCGACGGCCGACGACGTGGCGGTGGCGGCGGTGACGCGGGAGAAAGGGAGGGCCGCGGCAGCGGCGCCCGCCGGCACGCCGCCATGTCCTCCCCCCGCGGGCCGCCGTCTCGTCCGTCCCACCCAAACCTTGTCGATCCCTTCGCATGGTGATCGTCGATGCAAGCAGGCTGGTGCAGGTAGTTGTACATCAAATTGTAGTAGGCAACGCCAACACTGCCATGGCCATCGCCGTCGCCGGAGAAGAAGCCATCGTCTTCGAGCGGCAGCAGGAACGGGTCGTCGAGCAGCTCGCGCCGTCGGGGCGAGGCACCGTTCAATGAATTGCCTCATCACCGGGTCGCTCACCCTGTACAACGCAGCAGGCTTGATCCCGGAGATGACTCGCTTGTAGATTTGGATGGGGTTGGAGCACTCGCTGTAGGGGTAATCGAGGGTGACCATCTCGAGGACGCACATGCCGAAGGAGTAGACGTCGGCGAGCTCGTCGTAGGACTCCTCGTACACCTCGGGAGCCATGAACTCCGGCGTGCCTACGCAGCGAGTGTGGTCGCCGCCGCCGCCGGCGGCGGAGAGGCGGAACGCAGCGAGGCCGAGGTCGCCGATCTTGACCTCCCTCTGGTTGCCGTTGACGAAGATGTTGTCGCACTTGAGGTCGCGGTGGATGGTGGGCGGCGAGTGTGCGTGGAGGTAGGCGAGCCCGTCGAGGATCTGTGCGCACCAGCGCCGCACCGCCGCCACGCTCACCCGCCGGTGCTTCTCCCTGTACTGACGGAGCGTGCCGGAGACGAAGAGCTCGATGACGAAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.888324
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0098500.1 11 14973192 C T
Osa11LNT0098500.1 11 14973430 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa11LNT0098500.1 DTM_#DNAt_MULE_japo_Os0037 Chr11 - 14973021 14975071 1182
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0098500.1 osa-miR6249a Cleavage 4.0 23.241 1 21
Osa11LNT0098500.1 osa-miR6249b Cleavage 4.0 23.241 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0098500.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0098500.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0098500.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus