© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0008100.1
GAAGGAAAGAGGGTTCATTGCGATTGGGATTGGCATTTACATGATGAAAGAGCAAACAAAAACAGGGAGCAGCTACACTACTGTAGGGCAATGCTAAGGATCACAAAATGGGAAGAAACCAAAATGAAAGGAGAAAAAAAAAAGAAGGAAAGCAGGGTTCCCTAGCTTAACATGTCTCTCAGTCTCCACCAACTACATTTATCCTTAACCTTACCTACTACTCAACCAGCATGCCCCGTCACGTACTTAACACCAGCAGCAGCAGCACGCATTTCTCCATGGTTAGATAATTTACATAATTGTACTTCTTCTCTGGTACTGAGTCCTTGCGGAAATGGCTTGACGGATGGATGGATCATGGAACATGGATGGTGCAATCTGAGATGGAGTCCAAGTCCAGGACAATGGAGTCATCTAGGATTGCAATGTCCAGCTCATGGAAAAATAAACGAACAAAACGGTGGCGTCGCGGTGCCCTTTAGCTCCCAGCATGCGCAAAGTTGAGGCCATGTTGCCGTCTGATATGATCCGGTATGAGCCTGTGGATGAGTTCTGGAGAGGCGCTGGCTAGTTCATGCTTGAAGTTGAACAGAGGAGGGAATGGACGACCATTTGGCAGGCGTGCATTGGGCTCTCGTAGCTCATCAAAGAAGGAATGTGCACATGCGTCAAGAGCAGTGCAGCGTAGACTTGGTGAATATTGGAGAAGACGGGAAGCAAGGTCTATGGCTTCTGGAGGCATTCTCTTGTGGAAAATCTTGTGCCAAGGATGAGCCTTAATCTGAGGAAATTTGAACTCAGTATAGTTGGGGTTCATGCATCGTATTTCCTCACGGGTTGGAGTACCAAGAACCTTGATTATCTCTACTAGCTGGTCAACAGCACTCTCTCCAGGAAACAGTGGCTGACCAAGAAGTAACTCTGCAAGAACGCATCCAGCTGACCATATGTCAATTGAAGTTGTATACTCGGTTGCACCAAATATGAGCTCAGGAGCACGATAATAGCGAGAGCAAATGTATGATATGTTCGGTTCACCAGGAACCAGAACCTTTGCACTTCCAAAGTCACATAGCTTGACTTGATGAGTGAGAGGATCAACCAAAACATTTTGTGGTTTCACATCCCTGTGGCAGACTCCTGGAACAGTATGAATATAAGCTAACCCTCTGAAAAGCTGATAGATGTAAAGCTTCACATAGATCAATGGCATCCGCTGGTTAGCATTGCTGTAGTGCTTGAGCACACGGTAGAGTGTCTCAGGGACGTACTCCATAACAAGATTCAGGAACAGCTCATCCCTGCTTGTGGTTGAGAAGAAGCAGTGCTTCAGGCAGATGACATTGGGGTGTTCCATTGCGCGCATAAGCTGCAGTTCACGGTTCTTGTAACGCCGGTCCTGCAACACCTTCTTGATGGCCACCGTTTCCCCCGTCTCCAAGCACTTAGCCTGGAACACAATCCCGAAAGAACCAGTTCCTACAACTCGCTCCGCCATATAACTAATTGTCCGCTTCGGCTCGCCGTTCTTGCCGCCGATGGTGGTGGAGATGATGTGACCCGTCACGGCGTCGCCCCCGCCCTCCTCCTTCTTCTTCTCGCTGATGCCGGCGGTCGCCGCCGCCGCCGCCACGGCGGCGGGGGGCGGTGGCGCGTCCAGCTCCATGGGCTCCGGCCCCGGCGGCGCCTCCATGCGGGGGGGAGCTGAGCTGAGCTGGGGAGGGAGGCGGCTGCTGCTGCTGAGCGTTGGTGCTTGGCTTTGCGGGGGGATGGTGGTGGTGTGCTTTTGACCGGTCAGGGAGGGGAGGCAGCAAGGCTGCGGGGTGTTGTGGTGTGGTGTGGTGTGGCTGCTGCCGGTG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0008100.1 | 1 | 5775313 | G | A |
| Osa01LNT0008100.1 | 1 | 5774857 | C | T |
| Osa01LNT0008100.1 | 1 | 5775257 | T | C |
| Osa01LNT0008100.1 | 1 | 5776630 | T | A |
| Osa01LNT0008100.1 | 1 | 5777297 | A | C |
| Osa01LNT0008100.1 | 1 | 5777334 | T | C |
| Osa01LNT0008100.1 | 1 | 5778017 | C | A |
| Osa01LNT0008100.1 | 1 | 5778094 | C | A |
| Osa01LNT0008100.1 | 1 | 5778223 | A | T |
| Osa01LNT0008100.1 | 1 | 5775161 | A | T |
| Osa01LNT0008100.1 | 1 | 5776430 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0008100.1 | osa-miR5819 | Cleavage | 4.5 | 10.995 | 1 | 21 |
| Osa01LNT0008100.1 | osa-miR171h | Cleavage | 4.5 | 17.9 | 1 | 21 |
| Osa01LNT0008100.1 | osa-miR1858a | Translation | 3.5 | 23.093 | 1 | 21 |
| Osa01LNT0008100.1 | osa-miR1858b | Translation | 3.5 | 23.093 | 1 | 21 |
| Osa01LNT0008100.1 | osa-miR5072 | Translation | 5.0 | 22.128 | 1 | 22 |
| Osa01LNT0008100.1 | osa-miR5157a-3p | Cleavage | 5.0 | 15.147 | 1 | 24 |
| Osa01LNT0008100.1 | osa-miR5157b-3p | Cleavage | 5.0 | 15.147 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0008100.1 | 1 | nan | Resistance or Tolerance | Lodging resistance | R1944 | C955 |
| Osa01LNT0008100.1 | 1 | ph1.1 | Morphological trait | Dwarf | RM220 | RM272 |
| Osa01LNT0008100.1 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0008100.1 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0008100.1 | 1 | Rf3 | Physiological trait | Sterility | nan | nan |
| Osa01LNT0008100.1 | 1 | ppp1.1 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0008100.1 | 1 | prg1.2 | Physiological trait | Source activity | RG140 | RM243 |
| Osa01LNT0008100.1 | 1 | spp1.2 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0008100.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0008100.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0008100.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0008100.1 | 1 | gp1 | Morphological trait | Panicle/flower | RG532 | RM259 |
| Osa01LNT0008100.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0008100.1 | 1 | qHUS-1-1 | Others | Others | RM151 | RM3746 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)