Transcript

Sequence

>Osa11LNT0100200.1

CCAATTAACCCTTTCATCTTTCATCAAACCACTTTCATCTATACACAATGGTTTCATTTCCACCCCTTTCTGATGGGCCTAGCCCAAGCCCATCTAAGGATATTCATCATACATCTTGGGCTTTTGGCCCAGCTCAGCCCAGCCTTCATGACCATACAGCTTTTTTTTCCAGCCCGGCCCGTCTAAGCTTTCTGAAAGATCACTTTGTAAACCTTCAACTCTTGGAACTCAGCTAGCTCTCCGGAGATAGGCCATCAGGCCGAGGCCGGTGACCAGGGCGGCGCCGGCGGCCACACCGCTGTATGCCGCCGCCCACGCGTCCCGGCTCGACAGGTCCATCACCGCCGTGCTGCCGCCACTGCTGCGGCCGCCGCCGCCGCCCCCGACCCCGACGCTGGGAACCACGCTCTTCCTACGGACGCCGGAGCTACCGGAGTAGTCCAGGTACAGCTTCAGGCCCTTCCAGCCAGCGAGCCTGGCGTGGTCCACCGCCGCCGTGAGGTCGTCGTCGGACGCCAGCACCACCTTGTCACGGTCTTCGTCTTCGTAAAGGATTTGAGGGAGGTGGTCGCGGTCGAGGTCGGGGCCGAGCCGCTGGAGGATGCAGGTGATCAACGGCGTCAGGCTCTGCACCTCACAGCTGAACCGGTGCATCCGTCCTCGCCTGTCCTGGAGCTTGAACGAGAACGACTGCTCGTTGTGGATGTCCGACATCATCTGCGACCTCGATGCCTCGCTTATCTGGGATTGTGATTCAATCTCATCGTCTAGGGGTCCCAAGGCCATTGCAGAGTCCCAAAACCTCTGGACCATGGAGATTGCCGCGTCATCGTTCACGGCACCATCGCCGTTGCCTTCAACAATGGAGAATGCTGCATGTGTGATGTCGATCACGTCTAGGATGGAGACTATGGATCCATCTCTGTCCATGACAGGGAGATGCAAGAATTTCCTCTCTTGCATGATCCGGAGAGCATCGAGTATTGGCATGTCCACTGTCGCGCATTCGGGATCCAGTGTCATCACCTTCTCAACCGGCGTCGAATCCGCAGGGAGATTCTTGGCAATCATCCTCATCAAGATGTCCCTTGAGGTGAGGATTCCCTGAGCCTTGTTCCCGACGGCGACGACGGCCGAGCTCGCGTGCACCTCCACCATCTTCTGCGTTGCCGTCAGCACCGAATCGCCCGGCGACACGATGACGACCGTTGATTCCGCGGTGGTGATGGTAGAGAGGGACGGCCTGAGCATCTGCTCCTTGAAGGCCTCGACCATGGAGCTGGCGGTGGGGTCGTTGCCAGCGGCGGCGTCGACGGCGGAGGCGATGGCGGCGGCCTTCCCCTTGTCGGACGCCCTCTCGATCCTGGCGATGGCGTCGTAGAGGCACTTGGCGATGTCGAGCATGGCGATCACCTCGCCGTTCTCCACCACGGGGAGGTGCCTGAACTTGCCCTGCACCATCTTGTGCAGCGCCTCCACCGCCAGCGTCTCCGACGGCACGAACACCGGGTGCCGGGTCATCACCTTCCACGCCGGCGTCTCCTCGATCTTCAGCTCCCGCGCGATCACCCGCGTCGCAATGTCCTTGTCGGTGAGGATGCCGCAGAGGAGGGCGTTGGAGTCGGTGAGCAGCGCGGCGTCGGCCCGGCGCGCCGCCATCCGCCGGCACGCCTCCAGCACCGTCGTGCTCTCCGGCACCGTCAGCGCCTTCGACAGCCGCAGCCGCCTCACCGTCCGCTCGCCGCCGACGCCGCCGCCGCCCATCGTCATTGACCGGGAGAGCCCGGGAAGCATGGAGCCAGCGCCGCCGGCTGCGGCGGTGGGGCGGCGGGGGAGGGAGCCGCTACCCATCGACATCGTCCGCCGCGGCGGCGACGACCGGCGGCCGGCCATTGCGATGGTTCGCGCGTCTCCGAGTTCGCTGGCCAATTAAATTTGCT

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.914104

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0100200.1	11	17616627	T	C
Osa11LNT0100200.1	11	17616666	C	T
Osa11LNT0100200.1	11	17616739	T	G
Osa11LNT0100200.1	11	17616832	T	A
Osa11LNT0100200.1	11	17616886	A	G
Osa11LNT0100200.1	11	17616889	A	C
Osa11LNT0100200.1	11	17617100	T	C
Osa11LNT0100200.1	11	17617142	C	G
Osa11LNT0100200.1	11	17617409	T	C
Osa11LNT0100200.1	11	17617470	A	G
Osa11LNT0100200.1	11	17617525	C	G
Osa11LNT0100200.1	11	17617557	A	T
Osa11LNT0100200.1	11	17617759	G	A
Osa11LNT0100200.1	11	17617790	G	T
Osa11LNT0100200.1	11	17618246	T	C
Osa11LNT0100200.1	11	17619067	C	G
Osa11LNT0100200.1	11	17619105	A	T
Osa11LNT0100200.1	11	17619488	T	C
Osa11LNT0100200.1	11	17619612	C	T

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0100200.1	osa-miR397b	Translation	5.0	20.749	1	21
Osa11LNT0100200.1	osa-miR2931	Cleavage	4.0	19.344	1	20
Osa11LNT0100200.1	osa-miR5494	Cleavage	4.5	12.168	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0100200.1	11	gpl11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0100200.1	11	gw11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0100200.1	11	yld11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0100200.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0100200.1	11	hbd3	Physiological trait	Lethality	nan	nan
Osa11LNT0100200.1	11	Hbd3	Physiological trait	Lethality	nan	nan
Osa11LNT0100200.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0100200.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus