>Osa11LNT0100500.1

CACATTCCAATTTTGCCTTTGTATATGTTAATCCTCATCTAAGCAGGTGAAATGAATGTTATACACCACATAGCAGTAAATTACAGGCTACAACAGTGCATAAAGTATAAATGATTCCATTAGTTTTTGCCACAAGAAGTTCCCCTGCCATTTAGTGCAACTTTCCAGACCATGTTAAAAACGAAATGTCATTTGTACCAAAGTTTCCTTCATCAGCACTTTTCCTAAGAGCAGCAGTGTATCAGAAGCAATTGTACGCATAGTGATCATTTTGCAGCTTTTGGTGGATAAAACTCTCTCATGTACTGATTATCCTTCCGCAAAAATGGTGATTCCTTAATCCAGCCTAAATGACGTATTTCTGCAATGAGTTTCACCATATATGTAGGGCACTCTTTCATCAGCAGCCTCACAACGGCTTTCCTGTCCTCCACTGTTTCCTTTGCTCCACTGTATCCTTTGATTAAATCGTCTCGGTGTGCAACCATGTAAACTCTGAGGAAGAATAAGGAGTTATACAAGCTTTTGTCATTGATTTCTTTGTTTGGCTCTCTTGATTTGTTCACCTCCAACTTGTCAATGCAGCTTTTGAGACCAAGAGATGCTCTAAGCTTAAGCTGGGATATTTTTGCCTCATCGTTGTTATAGTGCCAATATATCTCCCTGATAAATTGCACTTTGCTGTTATGTTCCCATAATCCAGCTTCCCACACCAGATCTTCATACTTTACTGTTTTTTTCCCAAGAAGTTCAGCAAAATGGTTTAGTTCTGCGTGAAGTCCAAGGTTTTTATGGAGCTTTTGAAGAAGCTGCCCCAAACCATTCCAATTTGCAACCTTTAGCTCATCAACAGTTGGTACTGTGCTAGAAGCTTTACCCTTGCCTTTCCGGTTATTTCTCGCATTACCGGTTGGTGAAATCTCCAACTTGAAGTCAGTTAACAGGACACGGTAGTCCCGCTGAGCGTTCAACTGGTAAAATATTTTACTTTCATCAAAATTCAATGCCTTCAAAGGTATTTGTTCATCATCATATAGGTCATTGACATATTTGACGGCCATAAACATTTCTACAAAAATTTTGCATCCTTGGTCAGTGAAGCCAAATGTATAAGATTTGTCATTCGTGGCATCCTCCACATCAAATATTTCTTCTGTTGGAATTAAACTCAGTGGTCCATCAAAGCATGGAAAAACAATATATGCCAGCTTCGTCCCCTTTTCTTCCCAAATTCCAATAGGTTCAATGATGTTGCTGTGGGAGCAACTTGCAAGGATGTCAAAAAGTGCATGAGCATGTTCCAATCTTCTACACACTGCTACACATTTCTCTTGTTGACCTTCCGGATATGACAACATAGCATTATATGCCACACTATCAACAACTTTGCTGGCATAAACTGTCAAGTTTCTGCTTCGGTTTTGAATTTCAATCTTAGAGTCTCCAGGGATTTTAATTGGCATTGATGGATCAGGAATAGGTAGATTAGCCACAATTGACTCATTCACTTTCCTTTTTGGAGCCATCAGTAACTCTGTCGATCTGCTTCACGATCCGATCGCGGACCAGGCAGCTTCTTCTCCGCGTCCGGGCAGGGCTCTACCGATCTCGGGTGGACTCCGGCGACGGTGACGACAAGTTAGGGTTAGGGGTTGGGGTGCTCGGAGGCAGGAGGGGGAAGAGGGGGGGCGGGGCGGTGGCAGGTGACGGAGAAAGGGCGCGGCGAGGCGGCGCGGGATGCGTTACGGGGAGGTGAGGAGGCGGGGATCCGACGACGTTAGCCGCCGCTGACGCCTCGACGGAGGGGAAGAAGGCGGCGCGGAGGCGAGGTGTTGATGGCGGCGGACGGGGTGGGAGGAGGAGGAATACAGCGGCGGAGGGGAGGGCTGGCCGCGGCGGCGCGTGTTCTGGTGGGCCTTGCCGGAGTCGGAGGCGACGCCGGCGGTCGTCGGGGGCGGGTGGGGG

Explanation	CPC Score
noncoding	-1.09183

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0100500.1	osa-miR5526	Cleavage	5.0	12.211	1	21
Osa11LNT0100500.1	osa-miR5143b	Cleavage	5.0	13.589	1	24
Osa11LNT0100500.1	osa-miR5820	Cleavage	4.5	13.399	1	21
Osa11LNT0100500.1	osa-miR319a-3p	Translation	4.0	12.17	1	21
Osa11LNT0100500.1	osa-miR444d.3	Cleavage	3.5	22.573	1	21
Osa11LNT0100500.1	osa-miR1861e	Cleavage	4.5	13.524	1	22
Osa11LNT0100500.1	osa-miR1861g	Cleavage	4.5	13.524	1	22
Osa11LNT0100500.1	osa-miR1861k	Cleavage	4.5	13.524	1	22
Osa11LNT0100500.1	osa-miR1861m	Cleavage	4.5	13.524	1	22
Osa11LNT0100500.1	osa-miR2097-3p	Cleavage	5.0	21.713	1	22
Osa11LNT0100500.1	osa-miR2923	Translation	4.5	15.365	1	22
Osa11LNT0100500.1	osa-miR5143a	Cleavage	5.0	13.589	1	24
Osa11LNT0100500.1	osa-miR5500	Cleavage	4.5	16.419	1	22
Osa11LNT0100500.1	osa-miR5522	Cleavage	4.5	12.503	1	21
Osa11LNT0100500.1	osa-miR5534b	Translation	3.5	14.814	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0100500.1	11	gpl11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0100500.1	11	gw11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0100500.1	11	yld11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0100500.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0100500.1	11	hbd3	Physiological trait	Lethality	nan	nan
Osa11LNT0100500.1	11	Hbd3	Physiological trait	Lethality	nan	nan
Osa11LNT0100500.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0100500.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus