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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0008300.1

CGAGAGGAAAGAAGGATTAAAGGGAAGAGAGAGAGAGACTGATGGATAGCTGTAAATACATACAGTGGATCATACAGGAAAAATGAAGGAACATTACATTTGATTTTATCAGATACAAAAAAGAAAAAGAGAAAAAAAAACCAGCCAAACAAAACACTTGACCTCACCCAATCTGAATTACAATTCTTAGCTACAACCTTCGCCCAAAATGCCGGAATAAAATTACAAATCAGGGAAGTAGAGAAGAATCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGGATGCACAAGAATGAACAAAAGCAACCCGAATGAACAAATCATGTTACATTACACCCCAAAGAATGCAAAACCCAAATTAACAATGCACCAATCCTAACACGGCGCCGGCCCACCCCCGCGGCAACGCTCGTGGTTGTCGCGACGGGCCGGCGCCACCTCGCTAGAGGTCTAGAGAGCGTCCGGATCTCGGCCGATCACGAGTGCGGGCATGGCGCGGCCGCGGCGGCCCCCTCGCTGCCGATCAGGTCGGCATTGTCGCGGCCGCGGACCGGGGCCGCGTCCGCCGGTTGGGATTCCGCGTTCTTGAGGCTTTGCTGGTGGTAGATTTGCCGCAGCCTCTCTATCTCCTTCTTCAGTGCCTCCTGATGAGCATCTTTGAAGATCTTGTCCTGCGCGAGGGCGGCGATGCGCTGCTTGAGGTGGCTGTTGCCCAGCGTCAGCAGCGAGCGCTGGTGGTCGAGGAACGCGACGCGCGGTGACAACGCCGACACCTCCGTCTGGAGCGACGTGACGCTGCGCTCCAGCTCCGAGATGTACTGCAGCTTCCGCACGCGCGACCGCTGCGCGGACTGCCGGTTCGCCAAGATCCTCTTGACGCGCTTGGGATCGACGGTGGCGGGGGAGGCCGGCTGCCCGGGCGTGGCGCCGTCGCACTCGCTCTGCGCCTCATCTGTCTCGCCCTTGTCTTGCTTCTCGTCATTCATGCTGTTGTGGTCCGACGGCGACGACGCGCTCGCCGCGGGCGCGGCAGGCTGTTGCTGCGGTGGAGGCGGCTGCAGGTCGTCGGAGAACATGGACATGAGCTGGTCGTCGTCGAGGCGGTCGAAGTCGTGCGCCCCGACGCCGGCATTGTCGTCGGAAACGGGGTCGAGGAAGGCCACGGAGTCGCTCACAGAGCGACGGTGCGCGCCGCGCTTGGTCGCCGAGAAGTCGAGGAACTCGTCGACCCAGGACGGCTGATGCTGCTGCTGCTGCTGCTGCTGCTGCGCCCCGCCGTTCGCCGGCGCCGGCGGCGGGAGCGGGAAGGGCGGCAATGGCGCCGCGAGGAACGCCCCCATGGAGGGGCTGCGCTGGTGATGGTGGCCGTGGGCAGCATGGTGATGGTGCCCGCCCCCGAACTCCGGCCAAGCTGTCGCCATGGTTGGGATCTTGGGCGGCAGCTGCGCCATGGCCGGGGAGGGAGCCTGGCCCGGAATCAACGCAAATGCGCGCCCGCGATCGAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.594961
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0008300.1 1 6094952 C T
Osa01LNT0008300.1 1 6095600 G A
Osa01LNT0008300.1 1 6096465 C G
Osa01LNT0008300.1 1 6095955 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0008300.1 1 nan Resistance or Tolerance Lodging resistance R1944 C955
Osa01LNT0008300.1 1 nan Morphological trait Root RM7383 RM243
Osa01LNT0008300.1 1 nan Morphological trait Root RM7383 RM23
Osa01LNT0008300.1 1 Rf3 Physiological trait Sterility nan nan
Osa01LNT0008300.1 1 Rf Physiological trait Sterility nan nan
Osa01LNT0008300.1 1 Rf Physiological trait Sterility nan nan
Osa01LNT0008300.1 1 ppp1.1 Morphological trait Panicle/flower RG140 RM243
Osa01LNT0008300.1 1 prg1.2 Physiological trait Source activity RG140 RM243
Osa01LNT0008300.1 1 spp1.2 Morphological trait Panicle/flower RG140 RM243
Osa01LNT0008300.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0008300.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0008300.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0008300.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0008300.1 1 qHUS-1-1 Others Others RM151 RM3746
Osa01LNT0008300.1 1 gp1 Morphological trait Panicle/flower RG532 RM259
Osa01LNT0008300.1 1 nan Resistance or Tolerance Other soil stress tolerance C955 C885
Osa01LNT0008300.1 1 nan Resistance or Tolerance Other soil stress tolerance C955 C885
Osa01LNT0008300.1 1 nan Resistance or Tolerance Other soil stress tolerance C955 C885
Osa01LNT0008300.1 1 nan Resistance or Tolerance Other soil stress tolerance C955 C885
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus