>Osa11LNT0103400.1

TTTATCAATCTGAATCTGATATATATAATAAATAGGTCAAACGTAGACATGTTTGATACAATACATAAATACCTTTGACCAGCAGTGAAACACATTGTCTGCTAAATCTTCAGGATGCGTTTGCACAGTCTCATAGATATAGGAGAAAGCATATTCACAAATCTTGAAGCACAAAGGAGGTAAACAAATTTTAAAAATTTTAATTGGCTCTGTGACAATAATCTAACATCTACAGCACTATAAAAAATGATGTCTAAACGGCACAAGTAGGTTGGTGCAGTAGTGCGTAAGTTGCAACTTAAACCTTGAAGTATTAAACCTTGATGTTCACCCTTTGGCTCTAGAAACTATTCCTCTGCATTGTCATCGGCCACTGAGATGGAGTATTATCTCAACATTGTAGTATTACCTACCAACAGAGATTGTTTATTTTTTTATTTTACATTGACAGGAAGATCCTTGATACCTTGGTTCTTTGAAGAGGTTATATGCCTCCGTCCAATCTCTTGTCAACACGATCAGTTTTGTTCCTAATCAGCACAATTATAGAAATCACTGCCCCTCAGTTCTGAATTCCTCTATCCATTTTGAAGTGTTTAGGAAATATTGCCTGCCTTCAGTACCGCTCCAGACCAACAACCTCTTCTCGGGTGCCAAGGAGGTCCTCAACGCCGGTTGCTCAGCATGTTAGAATGCAGAGGAGGAACTGAGCAGCTATTCGATTTACTCATTGCTATCAGCTATCAACTTGCATGTGCATCTCCACGCCAACGCAGCCTATTATGCAGTAAAAAGTTCAGTGCATCGTTAAATAAAAATAAAAATACTTCAATCTACATGTTTAATTTTTATCTAAGGGTTATTTTTCAAAGCTACTAACAGTAATTAATAAGTTGTCAATCTGCAGGTCTGGGAAATGATTGGTATGTTAATGGGTGAAATCGAGTAAAGTTACATGGATTTGCATACTGATCTAAAATAAGATTATTAAAACAGATTATTCCATGATAATAACTGTACTGCCAGTAAAGATAATTAAAACAGCAGTAGTAGCAGGAAGTTCCACGCCCAATCTAATTTCAAAATGACTGTAAGAATTCAAGCATGAAGATAAATAATAATTCAAGCATGAAGATAAATAATAGCCGTCAAAATCTGATAAGATGGCAGAGATGTATATCAGTAAATTTGATATGCCGGCAGTGATTTGATATAAAAGTTTTTCCCCTTTCAATTTGACTAGACAACAAATCTACTCCATCAGAAATTAGAAATGTTGTTAGCTGATATTCAGAAAAAAAAAGTAGAGTTTGATTTAGTTGCAGAACGTCTCCAGTCTCCACCAATTTTTGTATCCGACCTAATGGCCCTGAAGGTGCTAGTTACAGTTACATCACCTTTATTTTCCTTTTAGTATATCTGCAAGCCATTGAAATGAGTCAGGACACAAATCAGCTAATATTAGCATTCGGGAGGGATAGAAAGATGTAAAATCCACAACAATTTTCAGACGAGTAATTTCACATAGAAACTCATAATTTGAATAAAAATAATACGTCACATGTAAACAATCCAATTGTGAAATGTCTAAAATTTGCTTCTTTCCTCCTTGGAAGGCAGAACCAGGAGTTCGATCCCTAAGACGATAGAGCAAGAGATAAGGATATTTACGCGAACACACAATAGGTTTGTGCGACAGTATTTTATAACCTCCGTTGCACTCGGGAGAAAAAGGCCAACATAACTGAATGGAGAGTGTGTTAAATCCATATTATTAAGCATCAAATGTGTGCTATTGCACCACATGAATCCTAGCATACATATACCCAAAATTTCTGTTATACTCAT

Explanation	CPC Score
noncoding	-1.11215

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0103400.1	osa-miR5788	Cleavage	4.5	10.99	1	21
Osa11LNT0103400.1	osa-miR5791	Cleavage	5.0	8.869	1	21
Osa11LNT0103400.1	osa-miR5832	Cleavage	5.0	11.605	1	21
Osa11LNT0103400.1	osa-miR5834	Cleavage	2.5	13.622	1	21
Osa11LNT0103400.1	osa-miR6251	Translation	4.5	11.173	1	21
Osa11LNT0103400.1	osa-miR166k-5p	Cleavage	3.5	11.616	1	21
Osa11LNT0103400.1	osa-miR166k-5p	Translation	5.0	13.356	1	21
Osa11LNT0103400.1	osa-miR166l-5p	Cleavage	4.0	11.616	1	21
Osa11LNT0103400.1	osa-miR1854-5p	Translation	5.0	7.461	1	21
Osa11LNT0103400.1	osa-miR2122	Cleavage	3.0	10.133	1	22
Osa11LNT0103400.1	osa-miR2929	Cleavage	4.5	17.362	1	21
Osa11LNT0103400.1	osa-miR3979-3p	Cleavage	3.0	21.189	1	20
Osa11LNT0103400.1	osa-miR5492	Cleavage	4.0	12.821	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0103400.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0103400.1	11	gpl11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0103400.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0103400.1	11	gw11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0103400.1	11	yld11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0103400.1	11	qBFR11	Resistance or Tolerance	Blast resistance	RM209	RM5349
Osa11LNT0103400.1	11	qPH-11-1	Morphological trait	Dwarf	RM229	RM209

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus