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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0103800.1

CAGTATTAGTCGGAGCCCAAATTTTGTGTTTACATATAATTGAGGTGTGATTACAATTCATCAGCATCAGGATCCCAGGTTCTAAGTTTTAATTGTACAGTTTGATTGATGCTAAAACTATACTCTAGAAATGCTTAAGTATCGATGGGCTCTTTCCTGTCCTGTTCGGTCGACTTGAACATTACTTAAGAGTTAAGAGGTCTGTAACATCAGAAGAGAAAGCTCAGCTAGTGTTCTGGATCATACGTCTGAATCTGCTCATGATCTTATGCCTAAGATCATTAATTTGCATTAAAAACCCTGCTAATTCGATAAGTATCCTCAGACGAAGATAGCTAATGTTTATTTTGACTTGCAAGAACGTACGCTTGATTGAGCCTGACTGCAATTTGGGCTGTTCTTCAAGGCCATACAAAGCGCATTTTGCATAGGTAAGAAGTCGCACATGACGTGGTGCACCTAGATTACCTAAAATTGACCTCAATAGTCCATCTGTTCGAAGTATGGTGAGAAAGTCAGGAGGCAACGACTCCATAAACGAAGATATATCATCCATTCCCAGAGAGTTCAGGTCCTGCTTTAATCGCATTTTCTCTTCAATAGACATTTGTGTTCCAAGAATTGATTTGCCTAAATCCGTAACTAACAAAGGTGTATATAAAGCATCAGGTGTCAGCAACAACTTAAACTGTTCTTGATTTCCAGGCTTTGGATATCTTCTTCCCCAGATATCTAGCAGCAACAGTGCCACCAGAGGCAAGCAGTCCAGACACCGCTTGACGTGCACTTGAGACCATTACCCGGCGCCTCAAAGCCTTGCGGACACAGGTTGCTGCTACATTTTTTGAAGAAACTGCGGCACCAGTTGGCATTTCTTTGCAATTCGATGCAAATCTTCCTTGCGTTCGCCTTTGGATTGTCCATGGGAGATAAGAGAACAGTTCGTTTGTTGCAGATGCACCACAATCCTGATGGAAAGCCTTTTGTTGTCCATAAGATGATGTCTTCAGTAGTCCTTCAGCAATGTACTCTTGTATCAGGGGTCTGTACATCGATTGAAATGATGGGAAACTACCCTCAACAATTTTCTTGACCTTGTTTTTGTCTTCGGCAAAGAGCATTCTTAAATCACCCATATATGATAGGCTGCAAATTTGGGCGTACAGGTCATACTGTACAAAAGGAATAAAAAGGGAAGGTGAAAACAAGCATAGAACCATATCATGGTTGTAACAACAATGCTGATACAGTGACACTAAACCTCAGTGAATTCTGCTGGCAAAAGGAGTAGAGAAGCTGATGTTGCCATTTTCAGATTAATTGTGTTAATCTTCCTTACATCCCAATGATCAACAAGAACATGAACAGGTTTCTGTAGTCGGCCGCTGAGGTAGAACCGGTCCCAGGTCAAGACATCCATGGCCAGGTCCTTCATCCTCACCACCCCGTACTTTATCCTCTTGTCCCTCCACTCAACAAATGGATTGAAGTACACCCCAACGCCGATGTTATCCGCAAGTCGAGTAATAGCGCCGGGGCCGAGGCGAGCCATCCATCCGGAGTAGTGACCAGGGTTCCTCTCCAAATTCTCGGAGTGCCACTGGAGCGGGTCGGGGACGCCGAGGATGTAGTCGACCATGGAGGACGCGTCGGGGCGGGCGTGGAGGAGCGTGGAGCCGTACGCGCAGCAGAAGTCCACCGGCGGGAGGAGCTCGCCGAGCGGGCCGGCCAGCGCCGCCGCCCTCGCCACCTCCTCCGCCGGCCGCATTCGGTGGATCGCGCGGGCGGAAGCTTCGGGGAGTGGAGGAACTGAAGAGATGGCCGGAGGAGCGACGCGAGATGGTCGCCGGCGGCGGCTGCCTCCGCTTCGCCGTGTGCGTGTC

Coding Potentia
Explanation CPC Score
noncoding -1.20738
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0103800.1 11 20418518 T C
Osa11LNT0103800.1 11 20418540 G A
Osa11LNT0103800.1 11 20418590 T A
Osa11LNT0103800.1 11 20418977 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0103800.1 osa-miR5528 Translation 4.5 13.646 1 21
Osa11LNT0103800.1 osa-miR5543 Cleavage 4.5 10.183 1 21
Osa11LNT0103800.1 osa-miR169f.2 Translation 4.5 21.316 1 21
Osa11LNT0103800.1 osa-miR169f.1 Cleavage 5.0 22.326 1 21
Osa11LNT0103800.1 osa-miR169g Cleavage 5.0 22.326 1 21
Osa11LNT0103800.1 osa-miR172b Cleavage 5.0 15.616 1 21
Osa11LNT0103800.1 osa-miR1882e-3p Cleavage 4.5 17.494 1 24
Osa11LNT0103800.1 osa-miR2101-5p Translation 5.0 16.043 1 22
Osa11LNT0103800.1 osa-miR2865 Cleavage 5.0 20.429 1 22
Osa11LNT0103800.1 osa-miR5493 Cleavage 4.5 18.982 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0103800.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0103800.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0103800.1 11 gpl11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0103800.1 11 gw11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0103800.1 11 yld11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0103800.1 11 qBFR11 Resistance or Tolerance Blast resistance RM209 RM5349
Osa11LNT0103800.1 11 qPH-11-1 Morphological trait Dwarf RM229 RM209
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus