© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0008500.1
CTAAGACTTTACCCTTTATGTGAACAAAAATCAACTTGCAATGCAACCGTAGATTACATCTTACATCTACACAAACCCTTTTGAATTTCTAATTGGCACACACATCATCTATGTCTGAAAATGTTCAGTTTTCTACTGTGCCTTGTGCTAGATCTGTGAAAAAACAGACCCCACAGATTAGCTGTATTGCCCATCCAGCACATGCTCTCTCATTTCCTTGTTGAAACTGTTGCTGCATCAACACCACATGATGTATTCATCTGACACCCTTTTCTGTTGAGTTTCTACTACATTTGGCGCGATCTTATCTGGACCCATGTGTGTAATATAAATGCTTCATGTTTCCATTATGCACACTCTTTTGCTTTGCTAGAAATGAACTGGGGACAGAGTAAACCATCAGCAGATGATTATTGGGAGGGAAAGCATCTTCTAGAAGCAACTGATTATACATCTGGTCTTACTGACTAAACAAGTTTCTACTTTTTTTCACACAACAGGGTAATTGGGTAAACCTCATTGCAGTTTTTTTTTTTCAGAAAGCAACAGGACAAGTTCAGTTCAGCAATTTCCTAGCTTCAGTTCTAAGTCGACGCCTTCAGACACATCGGTCTTGCACTCGCTCAAGGTCCTTTCGCAACGAACCGGACCGACTGGAAGGAAGCTGTAGAATGGCTGCGACGACGATGATGAAATGTTGCTTCCCTGAAGTTCACATTCATCATCAGTTAGTCCACCACAATTTCACAGCCAAGTCACACATTACTGGTTTCAGAATATGGTAGAGCATATCATTCACTTGCCTGAGATGCCATGGCACTGAAGTCGTTGTATGATGGCACCACATGAGGCTGCTTGAGGAGGTGTGGAGGCTGTGAGCTCAAGGTGAGGAAGGCAGGGTCTCTGGCACGGCCGTTCTCCTTGCTGCTTTTGCAGTGAGCAAAGTCAGATGTCCAGTCTGAATAATTTGCATTGGCACTGAAATAATTTGTTGCTCTGAACTCGTATCTGCTCAGGTCAGGACCAACATCGGCCAACCCTGCCAGCTCGCCGGTGGTCGTCGTCCTCGCCGAGAAAGGCGCCACCAGAGGAGGAGCTCTGCTCGTCGTCGTCCTGAAGGCGGCCATGCCCTTGAACATGAAAGGCCATGACCTGTCCACGCCGCCCGTCTCCCTCTCCTCCTCCGCCGCCGCGGCGCTGCTCCTGCTGCCGCTGCTGCTGTACATTTGGTTTGAAGGGGGCTCCGTTGGGTGGCGCGCCGACGCCGTCAGCGACAGGCCCGTGCTCACCATCGGGGATGGAGGCTGTGGGCACAGGCTCCTCTTGTACGGGTGTTTGATGGGATCCACTGGGCTCCAGAGCGCCGCCGGGAAGCCACCGTCCGCGGCGGACCTCGACTGCAGGGCGCTCAACGCGAGCGACGGCGGCGGCGGAGGAGGGAGGTGGCCGAGGACGCCATCACCGCCGCCGAGCGCGCCGTGGGAGGACAACGCGGCGCCACCCTCCATCTTCTTCTGCTCCTCGATCCGGAGCTTCTCCAGCTGCGCCACGCCGAGGCCGCGCTGGGGCACCTTCTTGGGCTTGTTCTTCCTCGACGCCCGCGCCACGCCGGTGCCAGCCACACCGCCGCCGTACTTCGCCAGCTGGTGCTGATGCTGCTGCTGCAGGTGGTTACTCCCGCCGTGCTCCTGCACCATCTCTCTCTCTCCCTCCGTCCGCACCAAGATCAATCAACCGCGCATCGATCAGAAAGGCGTTTCTTGATCACAGTTCAAGCCGTGACAAGGATCGCAGACGATCGATCGATGGAGGCGTGGTTCTCGGAGGAACACAAGAGGAGTTGAGCCGCATGCAAGCACGGATGTGGCAGGCTACCGAATCGATGGAGGAGGGGGTATATATATAGGGCGAAGAGTGTGGGAGCGAGCGGTGAGTGGTGGCAGGAGCGGGAGACTCGGGGAGCAGGAGGAGATCCAGATAGATAGAGAGATCGTCGTCGTCGAAGGAATCTTGTTCCTTCCGCCCGGCTGATTTGCCGCCCAAACCCTCGCTCCACTTTGCTCCCTATTCTCTCGATCGAATCACGCGCCTCCCTTCTCTCCCTCTCCTCTCTTGTCCAAGGTTGTAGGAGAAAATGGGGCCGAAATGTCAGGGGCAAGGCTCCCTCTCATCCGATCTCA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0008500.1 | 1 | 6139730 | T | A |
| Osa01LNT0008500.1 | 1 | 6139615 | A | G |
| Osa01LNT0008500.1 | 1 | 6139669 | A | C |
| Osa01LNT0008500.1 | 1 | 6139839 | T | C |
| Osa01LNT0008500.1 | 1 | 6141434 | G | C |
| Osa01LNT0008500.1 | 1 | 6141792 | T | C |
| Osa01LNT0008500.1 | 1 | 6141218 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0008500.1 | osa-miR5539a | Cleavage | 4.5 | 10.945 | 1 | 22 |
| Osa01LNT0008500.1 | osa-miR5516b | Cleavage | 4.0 | 17.74 | 1 | 21 |
| Osa01LNT0008500.1 | osa-miR5539b | Cleavage | 4.5 | 10.945 | 1 | 22 |
| Osa01LNT0008500.1 | osa-miR416 | Translation | 5.0 | 9.354 | 1 | 21 |
| Osa01LNT0008500.1 | osa-miR390-3p | Cleavage | 4.5 | 20.034 | 1 | 20 |
| Osa01LNT0008500.1 | osa-miR1429-5p | Cleavage | 5.0 | 14.58 | 1 | 21 |
| Osa01LNT0008500.1 | osa-miR1862a | Cleavage | 4.5 | 16.433 | 1 | 24 |
| Osa01LNT0008500.1 | osa-miR1862b | Cleavage | 4.5 | 16.433 | 1 | 24 |
| Osa01LNT0008500.1 | osa-miR1862c | Cleavage | 4.5 | 16.433 | 1 | 24 |
| Osa01LNT0008500.1 | osa-miR2919 | Cleavage | 3.0 | 9.777 | 1 | 19 |
| Osa01LNT0008500.1 | osa-miR2919 | Cleavage | 4.5 | 14.533 | 1 | 19 |
| Osa01LNT0008500.1 | osa-miR2924 | Cleavage | 5.0 | 22.508 | 1 | 21 |
| Osa01LNT0008500.1 | osa-miR1862f | Cleavage | 5.0 | 16.433 | 1 | 20 |
| Osa01LNT0008500.1 | osa-miR1862g | Cleavage | 5.0 | 16.433 | 1 | 20 |
| Osa01LNT0008500.1 | osa-miR5516a | Cleavage | 4.0 | 17.74 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0008500.1 | 1 | ppp1.1 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0008500.1 | 1 | prg1.2 | Physiological trait | Source activity | RG140 | RM243 |
| Osa01LNT0008500.1 | 1 | spp1.2 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0008500.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0008500.1 | 1 | qHUS-1-1 | Others | Others | RM151 | RM3746 |
| Osa01LNT0008500.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0008500.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0008500.1 | 1 | gp1 | Morphological trait | Panicle/flower | RG532 | RM259 |
| Osa01LNT0008500.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0008500.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | C955 | C885 |
| Osa01LNT0008500.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | C955 | C885 |
| Osa01LNT0008500.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | C955 | C885 |
| Osa01LNT0008500.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | C955 | C885 |
| Osa01LNT0008500.1 | 1 | Rf | Physiological trait | Sterility | nan | nan |
| Osa01LNT0008500.1 | 1 | Rf3 | Physiological trait | Sterility | nan | nan |
| Osa01LNT0008500.1 | 1 | nan | Resistance or Tolerance | Lodging resistance | R1944 | C955 |
| Osa01LNT0008500.1 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0008500.1 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0008500.1 | 1 | Rf | Physiological trait | Sterility | nan | nan |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)