>Osa11LNT0104100.1

AGGAACTAATAACAGCAGATAGCTGGCAAATTTTAGGAAGAAATAAGTACAGAGATAGGTAGATCAGATTAGCACAGATAGATGGTCTAGAAATAATAGGTCAGGACTGACACATTCAACAGGCAGGGTTCCTAGTCTTAGATAAGCACCCAGCATACAGTGCCTAAGTTGGGACTCATCAGGATGGTTACTGACTATCAATTGCTAAGTGTTGCCGCAGCTCAGCCCGGATGCTGTCAAACTGTCGTTTAGCATCACCGTGTGCTTCCTCAGCATTGTTATTCTCCGCCTTCAGTCTTGACAGCTCTGCATCTTCATCCTCCTTTTTCTTTGACATCTTCTGGCCTTTCCATCGGAGTTTCCCAAGTTCCTGTTCAAGCTTGGCTATAGCACTATCATTTTCATCAAGCAGAGCATCAACACGGGACACAGCAAAGGCCTTATCCGCTATCTGTTCTTTCAGTTTCTCCCCGTCTCTGAGAGAATTGGTGTAATCTGATCTGATCTGGAGCAATTTGGTCAGAATCTGCTGCAAAGACTGAACACTGAATCCATTTTCTTCTAAAATGGTAAGTGTTTTGATGTGGTCTTCAAATATTTCCATGCTGTCCGTTATGCATAATTTACTTATATTATCCACTGCATCAGTATATGACCACATTAGACCTAAAGCCGTTCCTTCACGCAGCCCTAGTGGATGGTGCTTGAGTGGAAGGAAATGTGGCTGCTGTGGCATCTTTCGAAACACATCCATCTCTTCAAATAAAGACCAAACATGGGACCTCTTGGTGAATGGGGCCTGCTGACCAGTGAGTTGACACTTAGATATATCTGAGACCATAGAATTCCCACCAAATGAGCAGCGCCTTAATATGGCATTGTCACTGGTGCACGGCAAACTCCCACTGTTCCCAATATGTAATTGGATTGATCCCTGTCCCACTTTCCCACCCACCTCATGCCCAACTGAACAGTCAAGAGGTAACATAGATTTCTCCATAAGATGGCTGATTTCAGCTACTTCGGTAGCCACATTGTCAGATTCTGCATCTCTATTATGATTATCTTGACAAATGCTATTGATTGTAGCAGTCAGCTCTTCATCGAACAGACTAGAATTTAAGTTAACTTCAGAGAAACCATCAGTGTTCCAATCACGAGAACGTTTTCCATTGACAACTGATTCAAAGCCTGGAGGTGTTAGTGGCAACAGTTCTTGATTTGTTACTTCATTTGCATTCAGGTTATCCTCCAAAGCCTTATTAAGCTGCTGCTGAATATGAGTTTCACCCTCCAACTGTCTCTCCACAGAAGATCCTTTCAGTCGCCCTGCAGCTTTCTTTCTACGTATTGGCTGGACAGTACTGGTTGCATCCAATGAGTTATGTGGGCTATCTGATTCTTTGGAGCCCTTCTTTCTAGCAAATTTCTTCAAGATAAGAAACTTAGTATTTGAACCACTATCAGCCTCTCTTGACACGAAGTCAAAAGCCTTTATTTGTTTACCCAGAGGAGATGGGGTATTGCATTGTGAAGAGACACTCAAAGCACAAATAATTTCTCTGCTTGGAGAAGTACTGTTTCCCTTTAAATTATCAGAGGGATCGTTCATGTCCTGAAGTGCATGAATAAGTCTCATTTTACCCCGTTTGAGCTCGGAAGGCATGATTTTTTTAGTGTGTAGTTGCTGGACAGAGAGCAGCCCTCCCCGTGCCTTCCGTACAGGATTGTATCTGCGAGATAATGCCATTTTCTGTTTTCCAAACTTTTTAGTTGAAAGCATAGCATAGCCTTCATTCATACTTGTTCCACAAGCAGATGTATTAGCCTGACCATTCGTAAGCATCATGTCAGATATAATTTCTTGATTAACCATTGTCTTCCCAATACCATCTTCTCTTGAT

Explanation	CPC Score
noncoding	-1.12215

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0104100.1	11	20533196	G	A
Osa11LNT0104100.1	11	20534304	G	C
Osa11LNT0104100.1	11	20534619	A	G
Osa11LNT0104100.1	11	20534994	A	G
Osa11LNT0104100.1	11	20535291	A	G
Osa11LNT0104100.1	11	20533866	A	G
Osa11LNT0104100.1	11	20533729	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0104100.1	osa-miR5540	Cleavage	5.0	12.845	1	21
Osa11LNT0104100.1	osa-miR5512b	Cleavage	4.5	19.712	1	21
Osa11LNT0104100.1	osa-miR160f-3p	Cleavage	4.5	19.178	1	21
Osa11LNT0104100.1	osa-miR171i-3p	Translation	4.5	20.149	1	21
Osa11LNT0104100.1	osa-miR1423-5p	Cleavage	5.0	24.082	1	24
Osa11LNT0104100.1	osa-miR1432-5p	Cleavage	4.5	24.944	1	21
Osa11LNT0104100.1	osa-miR1441	Translation	5.0	17.98	1	21
Osa11LNT0104100.1	osa-miR2095-5p	Translation	4.5	23.725	1	22
Osa11LNT0104100.1	osa-miR2118o	Translation	5.0	20.956	1	22
Osa11LNT0104100.1	osa-miR2873a	Translation	4.5	14.516	1	24
Osa11LNT0104100.1	osa-miR5337a	Cleavage	4.5	22.788	1	21
Osa11LNT0104100.1	osa-miR5512a	Cleavage	4.5	19.712	1	21
Osa11LNT0104100.1	osa-miR5524	Translation	4.0	15.382	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0104100.1	11	gpl11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0104100.1	11	gw11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0104100.1	11	yld11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0104100.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0104100.1	11	qBFR11	Resistance or Tolerance	Blast resistance	RM209	RM5349
Osa11LNT0104100.1	11	qPH-11-1	Morphological trait	Dwarf	RM229	RM209
Osa11LNT0104100.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus