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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0104400.1

AACGATCACAAATTACAAAGTTGCGTAGTAATTTATTATGTCTGGACAAAGTACATGACTGGAAAAATGCTTTTCCTAGCAAAAAAGACATAAATCACGGATATGTTTACAGGCATGATTACAACTGCATGGCAATCAGTTTTTGCGCTCAGATGTCCAAATCCCAAGTGATAACAGTATACTTCAGTGTACTATGCATAAACCAACAAGGTATGAAAGGGTAAGAGATGAACACCCAAGGAATGAACTCCAAACTGTCATTCAGCTCGAAGATATATTATGTGTTCCCTACAAGGATTGTTTGATTGAACTCAATTCCTTAATAATATCTCCAGTTAACATTCTATTCGACGGCATTTCCTGAGAGCAATACAATCCAAGCCTGAGTAATGCGACCAGGCAATTGATCCTTCCTTTGCATGAAGAATCGTCAGCGGTTTGAAATTCATTCTCAAGGCCCAAGAACAGCTGGGTGTCAACAACATCCATCATTTTACCATGTAGACCCAGCTCAACATACTCACGGAGGCTCAATCCTTGTATGGATTTGTTATCGATGGGCCTCTTCCCAGTTACCATTTCTAACACAAGAATTCCATAGCTGTAAATATCTCCTAAAGTTGATACCGTATTTCCAGCACCATACTCTGGAGGAGCATAGCCGATTGTCCCTCTAAATCCCATTGAGCTTGTAGACTGTTGGAGCAATGAGTTGCCCTCAACAAGAATCTTCGCAAGTCCAAAGTCTCCAAGATGTGCTACCATCTCAGCATCTAAAAGCACGTTGCTTGGTTTCAGATCACAATGTACAACAGGTGTTGGTCCATGGCAATGTAGATAATCCAGCGCATTAGCCACATCAAGTAGTATGCCAACTCTCTCAAGAAGATTCAAGTATTTGTGATCAATCTGGTCATCTTTGTCAGGATGTAACCAGCCTTCTAAACTGCCATTGGGCATAAAGTCGAAAACAATTGCTTTGAAGTCATTGCCGCTGTTATCAATGCTTGAGCAGGCTGTAATTATCTTCACGAGATTTCGGTGCCGTAGGTTTCGCAGTGCATTGCATTCAGCGGCAAAACTCTTAAGCGCACCAGAAGTCTGAAGTTTTAGTACCTTCACAGCAACATAATATGGGCTTTCACCAATTTGAGCAACTAGCTCTCCTTTGTACACAGAACCAAATGAACCAGAACCTAACAAATTGGCTATGGAAAATTCATCTGTTGCTTTTACCAACTGGGAATAAGAAACCAGAGGATGGCCTCGCATGGATGTAGTTGAAGGGATTTCTGTTTGGATCTAGGATTTCTTCGGAGCCCATAGCATTGGAGATTTCACTTCAGGTTCAGGGCGCCGCGCTCTCGCCGGACAGCGTCCGTCAGGACGTTGCCGGTTGCCCCGCCCAACTCTGCGTCGGCGGCCGCCTCGCCTCCTGCGCTCCTCCTCCGCGGCGGGGGCCCCGCTTCTATGGTGGTGGTAAATGCTCCGGTGAGCCTGCCTCCCCCACCACCGGCCTACACCGGCGGCGCGCCGGCGCCAGGGGCATCTCACTCACGAGGAATCCGATGAAAGCGACGGGGAAAGAAAGAATGAAAGAAACAGGAAAATGCAAACGCAAAACGAT

Coding Potentia
Explanation CPC Score
noncoding -1.15694
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0104400.1 11 21250938 C G
Osa11LNT0104400.1 11 21250951 C T
Osa11LNT0104400.1 11 21251003 G A
Osa11LNT0104400.1 11 21251072 A T
Osa11LNT0104400.1 11 21251117 C T
Osa11LNT0104400.1 11 21251298 G A
Osa11LNT0104400.1 11 21251330 C T
Osa11LNT0104400.1 11 21252156 T C
Osa11LNT0104400.1 11 21252283 A G
Osa11LNT0104400.1 11 21252411 A T
Osa11LNT0104400.1 11 21252476 A C
Osa11LNT0104400.1 11 21253174 C T
Osa11LNT0104400.1 11 21253541 T C
Osa11LNT0104400.1 11 21254137 A G
Osa11LNT0104400.1 11 21254178 A C
Osa11LNT0104400.1 11 21254256 T C
Osa11LNT0104400.1 11 21254436 A G
Osa11LNT0104400.1 11 21254616 G A
Osa11LNT0104400.1 11 21255298 G A
Osa11LNT0104400.1 11 21255461 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0104400.1 osa-miR5823 Cleavage 3.0 12.741 1 24
Osa11LNT0104400.1 osa-miR5516b Cleavage 3.0 18.988 1 21
Osa11LNT0104400.1 osa-miR7693-3p Cleavage 4.5 18.611 1 22
Osa11LNT0104400.1 osa-miR169f.2 Cleavage 5.0 18.364 1 21
Osa11LNT0104400.1 osa-miR1319a Cleavage 5.0 20.11 1 24
Osa11LNT0104400.1 osa-miR5488 Translation 3.5 14.213 1 21
Osa11LNT0104400.1 osa-miR5516a Cleavage 3.0 18.988 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0104400.1 11 qBFR11 Resistance or Tolerance Blast resistance RM209 RM5349
Osa11LNT0104400.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0104400.1 11 gpl11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0104400.1 11 chs Others Others nan nan
Osa11LNT0104400.1 11 gw11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0104400.1 11 yld11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus