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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0104600.1

GCTATTATGTCACCAAATCCATTATTTATACCGGTAAAAACTTGTCCCTGATTTTTTTCCCTTTTTACATAGATGAAGCAGAACAAATCGGCATCCTAAGGTAATACCTCGGGCTGAGCCCTTTTATCAAACCAATACATCAAATTTGTCATTCCGATTTTCTGGAGGTGATTTATGCAATGCTGAGGATGACAACATGACGTTGCTTTTGGTCACCTGCCCATGCCTGGCAATGGCAATCCTTTGATGGAGAAGAATGGGAATGTGCAGGCCTTCTTTCGGAACCTATAACATGCTAATTTGAACCGGTTGTTGTAACACAAGGGGCAGAAGACGCAGAAGTGTTGCCACTACTTGTCGCTGCAGTAGTTGGATTGTTTTCTGTAACTCTCTCATTGCTTGATTCTGTACTGGGAATAACTTCAGAAGTGGATATTGCTGGGCCATCACTTGTTCTACCATTACTACCTCTAGTTTCCAGACGCTCCATCATCCTTGATACGGATGCAATTCCAGCATTAACTTCTCTTCTTACTTCAGAACCAAGATCTGCCACAGATGAATGACGCGAAAAAAGTCTCTCCTTCCATCCTCGAGTACTTTTTGTAATAGATTCCTTGTACTTCATAGAGACAGCATTTAAGCGAGACTTCAGAGAGTCTGAGAAAGACTGAAGATCTGAAGGCCCAGCTCTGTCGTTGTTTACTGGAGTTGATTGCCCAGTGGAATGCCTCCTGTTGAAAAACCTAGGGCTAGATACAGGGGTACTATTTCCAGATGAAACAACAGCATCTTGATCAGCATCGTAGGTAAGCATCCCAGGACTTTGATTGCCTGCTTCTTCATGGGTGTTAGCATGCAGTGATAATTCACCAGTTGTGTGGACAGGACTTGATTCATTATCCACTTCCCCTTGAACGGACGATGAAGAAACTGAACCAGCAGAAGGCATGTTTGGATGCGAAGAAAAAACTAAGAACTGTGGACGACCATGAGAGCCGGAACGACCCCTGTGTCCTTCTCTTCTACCAAGGTGGTGTGACCTTCCCATTGCAGCGGCTGCTGCTAGGTGCTGTAATATACGCTCTTCAAGTTCAGCATCATTACCAACAACAGGTAAATGCTGAACCTCAAAATCTCCAAGAGCAGGATGATGAAATATAGTTGTATTTCGAGTTTGATTGGTCCTTACATTCCTTTCACGCTCCACTGCCTCGAGCAGCTCTTGACTGGTAGGATCCTTCAAACTGATAGGCTGCCAACACATAGGACACTGAGAACTTCTCTGACACCATTCAAGAATGCATTGGAGGTGGAACTCGTGTTTGCAACCAGTCAATGTGGAAGGGTCACTCTCACAGAACGCCTCAAGGCAGATACTACATGCATCATCACATGCATCCTGAATCCCACCCTCAACAAAGGCTGCAGCTGATGTCAAACCCTCCATCTTGGCTTTCTCATCAGTTCCAGATGCCATTGCAACGGAATCACAACACTGATATCAGGGGCACCGCCGCCGACGCCGACGAGGACGCCCGATCGGATCCGGCTGCGCGCGCGAGGCGATGGGGAGCACGAAACCCTAGCTAGCTAGCTAGCCTCTTCGCCTCCTCCTCCAACCTCCTCTTCTCTCTGGGTGAGGAGGCGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.768091
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0104600.1 11 21480256 C T
Osa11LNT0104600.1 11 21480317 A T
Osa11LNT0104600.1 11 21480443 T C
Osa11LNT0104600.1 11 21480478 T C
Osa11LNT0104600.1 11 21480607 A T
Osa11LNT0104600.1 11 21480638 A C
Osa11LNT0104600.1 11 21480685 T C
Osa11LNT0104600.1 11 21480868 A G
Osa11LNT0104600.1 11 21481207 A G
Osa11LNT0104600.1 11 21481276 T A
Osa11LNT0104600.1 11 21481607 C T
Osa11LNT0104600.1 11 21481661 G A
Osa11LNT0104600.1 11 21481707 C T
Osa11LNT0104600.1 11 21481999 G A
Osa11LNT0104600.1 11 21482275 A C
Osa11LNT0104600.1 11 21482378 C T
Osa11LNT0104600.1 11 21482448 A C
Osa11LNT0104600.1 11 21482565 A G
Osa11LNT0104600.1 11 21483043 G A
Osa11LNT0104600.1 11 21483057 C G
Osa11LNT0104600.1 11 21483342 A G
Osa11LNT0104600.1 11 21483808 A G
Osa11LNT0104600.1 11 21484408 A G
Osa11LNT0104600.1 11 21484477 T C
Osa11LNT0104600.1 11 21484226 T C
Osa11LNT0104600.1 11 21484552 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0104600.1 osa-miR6248 Cleavage 2.5 12.304 1 21
Osa11LNT0104600.1 osa-miR6248 Cleavage 5.0 18.0 1 21
Osa11LNT0104600.1 osa-miR2864.2 Translation 4.5 11.072 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0104600.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0104600.1 11 Xa21 Resistance or Tolerance Bacterial blight resistance CDO534 RZ537
Osa11LNT0104600.1 11 chs Others Others nan nan
Osa11LNT0104600.1 11 gw11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0104600.1 11 gpl11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0104600.1 11 yld11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus