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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0104900.1

AGTCAGGTAAACCTCTTAAATCATGCTCCTGCTCCCGCCATCCAGTTGCTGTCTACATAAATTACAAGAACTGAATCACTGATTTCCAACACACACAGCTCTAGCAGGGTTGATCCTATTATGACAAATCGAGCTCTTTTCTGCTCTTTATTACAGCATTTTGCTTCGACTCCAGGTCGAGTGCATCCAGGTCCCATGCGGTCGCCAAGTAGCCATATAGGACCCATGTCCGTTCCCCCTTTGCGCCCACTTTCACAAGCAGCGGATTGCTGCCCCCATCAGCACCAGGGGGAACACTACGGACGCGATACCATTCAGCGCGTCCATGGCCTTGTTTCTCCAAGGACTGAGCAAGCCTCTCGGCCTCGCTGAGACCAGCGAGGCTGCTAGCAAATTTCACCAGCATGGATCTCTGTCCATCCTTTCCAGAGAGTGGCTTCACGCTTGCACCCACAAAGCCCATTTCTCTGAGCTTGCCCTCCATCTCTTTATTACTCATGCCATCCTTTTGTCCATCATTCTTTGACTTGTATGTGTTCTCAATTATGACTGTTGGTGGCCATAAAATAAGATCTCCTTGATTGGCTTCAGCATCAGCAGTAGATAATGTTTGGTAAGCCTTTTTGTGCACAGGATCTACGGAGTAATTCCAACCCATAAGAACACACAAAGCTTTGTGCAACCCAAGATGATCAGCACGAAGCTCTGCACTCTTCGCATAGTATGAATGATTGAGGAGTGAATGCAAATCTATGGAATCCCTTCCACACACGGTGCATTTCAGCTGCGAAATCTTCCCGTTGGCCCTGTAATTCTTCTTCTGCTCCGCATTCTCGTTCATTAATTTAACCATCTTAAGGAAGGAGCTCTTCAGCTGCTTCGCATCCACGTCTGGCGTCTCCACCTTCACCTGCTTCGCGACGCGCTTCTCCTCCGGCTTCTGCTGCTGCTGGCGACCCGAGGACTCCCCGGGGACACTACCATTGGCCTGACCCTCCCACTTCCGCTTGGGCGCCGGCATTGGCAGCAAGGCCGCGGGCGGCCGCATCGGGGCCCATCTCTCGGCGGTAGGTGGCGGGAGACCGACCGGAGGGCCGAGCTGGCGCGCGGGGAACGGCGGCAGCGGCAGCGGCAGAGGCTGCCGGAGCTGCGGCGGCGGCTCGAGCGGGAGCGCGAAGTAGGTGCGCACGGTGCCGTCGGAGAGCACCACGTTCCGCCGGTCGAGGCTCTCGAGGCCGTACTGCGGCGGGGGCGGGATGGACGCCATGGCCGCCTCCACCGCCGCCACCGTCAGCAGCGGCCGAGACGGTGGCAGCGGCGGAGGCTGCTGCTGCTGCGGCGGCGGGAGGTGGTGGTGCGGCGAGGGGAGGCGCGGGTGCGGGGAGGGGAGGAGCGGGGCGGAGTTGGGGTTAGCGCTGTTCGTGGGGTTAGCGGCGGCGGGGGTGGGGGTGGGGGTGGGGCCGGAGCGCTTGGAGTTGGGATCGGCGGCGGAGGAGGAGGAGGAGGAGGCCTTGGAGGAAGCCTCCGGCGGCGGCGGCGGCGGAGGCTTGGGCCGCGGCTTGGGCTTGGAGGTGGCGGCGGATTTCATGGCGGAAGATTGCTAGGGTTTCTGGGGGAGCGTCGGATTGGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.481909
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0104900.1 11 21884073 A C
Osa11LNT0104900.1 11 21884125 G A
Osa11LNT0104900.1 11 21884188 T C
Osa11LNT0104900.1 11 21884421 C A
Osa11LNT0104900.1 11 21884467 T C
Osa11LNT0104900.1 11 21884497 G A
Osa11LNT0104900.1 11 21884770 G A
Osa11LNT0104900.1 11 21884944 A T
Osa11LNT0104900.1 11 21885312 T C
Osa11LNT0104900.1 11 21885654 C G
Osa11LNT0104900.1 11 21886287 C A
Osa11LNT0104900.1 11 21886435 A G
Osa11LNT0104900.1 11 21886493 G A
Osa11LNT0104900.1 11 21886506 A G
Osa11LNT0104900.1 11 21886554 A G
Osa11LNT0104900.1 11 21883466 T C
Osa11LNT0104900.1 11 21884442 C T
Osa11LNT0104900.1 11 21887057 A C
Osa11LNT0104900.1 11 21887112 T C
Osa11LNT0104900.1 11 21887479 T C
Osa11LNT0104900.1 11 21887487 A G
Osa11LNT0104900.1 11 21887502 C T
Osa11LNT0104900.1 11 21887513 C G
Osa11LNT0104900.1 11 21887870 A G
Osa11LNT0104900.1 11 21888015 T C
Osa11LNT0104900.1 11 21888193 A G
Osa11LNT0104900.1 11 21888619 T C
Osa11LNT0104900.1 11 21886562 A G
Osa11LNT0104900.1 11 21886741 T C
Osa11LNT0104900.1 11 21887263 G A
Osa11LNT0104900.1 11 21887478 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0104900.1 osa-miR164e Cleavage 3.5 21.893 1 21
Osa11LNT0104900.1 osa-miR818a Cleavage 5.0 22.952 1 22
Osa11LNT0104900.1 osa-miR818b Cleavage 5.0 22.952 1 22
Osa11LNT0104900.1 osa-miR818c Cleavage 5.0 22.952 1 22
Osa11LNT0104900.1 osa-miR818d Cleavage 5.0 22.952 1 22
Osa11LNT0104900.1 osa-miR818e Cleavage 5.0 22.952 1 22
Osa11LNT0104900.1 osa-miR2103 Cleavage 3.5 16.136 1 22
Osa11LNT0104900.1 osa-miR319a-3p Translation 5.0 12.651 1 21
Osa11LNT0104900.1 osa-miR1423-3p Cleavage 3.0 23.84 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0104900.1 11 gpl11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0104900.1 11 gw11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0104900.1 11 yld11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0104900.1 11 Xa21 Resistance or Tolerance Bacterial blight resistance CDO534 RZ537
Osa11LNT0104900.1 11 chs Others Others nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus