>Osa11LNT0105200.1

GTTGTTTCCCTTTGGCCTCCATTGATTCATCAATAAATAATGTTACATGTAATATTCTCCGTGTGTTATATGGTGGCTATAGTTTAGTGGTAGAATTCTTACCAGCCACAAATTAACGAACTTTGTACATTTTTCTCACAAATTAGGAGAAAAGCAGGAGTAAAACAGAGCCACGATCAAAACCAGGAGTAACCCGGAGCTCGTTGTTATGGCTTCTTTCCCTGGATCTTTTTAAGGTATTTCCTGTGAAGTTTCAATGCAACAGCGCAAGCCTTTTTCGCATCCAAATTCCCATTAACATCATTCAAAATCCTAATAACATCATCAATCCCTCGAGCTTCCTGCAGGAGCTTCGCACTGTTCTCCTTCAGAACACTAGCAACCAGGAAAACAGAAATCGGAACAGGACCATCGTTGTCACTAGTAGCCCCATTCTTCATATTGTCTCTCTCGTACTTGCCAAATTGGCGAATTGATTTTACTTTTTGCCTATGTCCTGGAGTTACACCAGTTGCAGCATCAATATGTTCATATGTGGAGAAGATGTCAGGATCATATTCTAGAGCCCACATCATCTCCCAAAGGTATAGTGAGTCCCCAAATGATAATTCACGCCGAAACAATACCATGAACATGCGGAATGCAAAGAGATAATCACCCCCACCAAGTGTTTCTAGGTGGTCATGTAATTTTGGGTCAAGCACTTGAATGATAGACGCAAGGTGCTGAAGCTGGTTCTCCACCCCAACAGATTGCTGTGTGCATCAGTCTACGCATTAATCTCTCAAAGCACCAAAATGCATCTGCTTCGTCGTTGAGCAGCACTATCATCGGTGAGCATAAATCACTCATTCCTTGACAATAGCCAATTTCTTTGTCGATCCAAGCATATACAGCAAGAATATCCCATAACTTCGAAAGATTTTCTTTGTTCTCATAAAACACCATGGATCGATCAGTGCGCAGCACATCAAGGCCAATTTGATGTAGCAAAAGCTTCCATTCGATAATTTGTTTATCCACCACACAATTTTCGGACTTGTCCACCTCATTTTCGTTCCTGCTGCTGGATGAACTACCTTGCATTGTGTGCTGGTCTGAAGTAGCTTCGAGCAAAACCAAAGGATCCTTAATAGGTTTTCCATCCTCAGTTATAATTGGGGCTGTGATAATTTTACCGCTACCAACATGGGAGTCCATATCTTTGCATTCTTGCTTCCATATGGCATATTGTATTCTACATAGATCGTCTGTTACAATGTTGAGGCTAAACAGATAAAAAGTTTGATGATTGCGTCCTAATTATCGCAATAAAAAAATAGTATGAAGAACCAGGGGGGAAGGAACTGCAATTCTTATCAGTCATAATAACCAATTTTCAGTTTGCAGTAGGCATGTCAAAGAGAGTTAGCACCAATCTTCCATTTCCAAGGTGATATCGTTGTGCAAGACTGCATGCTGCAACCCTTTGCTGCACTATGTGATCTGCATTTCAGCACTTGTTTGTCTGGCTCTTCACCAAGGAGTAGTGACTAATGACTAATGCGAGCCACAGCTGGGTTCAGTGGCAAACCAAAGGGCATGAAAGACAAAACAAGATTGCAGAAGCACAAACTAGAGCAAGGGCAGATGCAAGTGGTGGCACAGGCCCGATTTGGTTGTGCCTCCAACATGATACTTTCTATCTGTGGCAAAGCATGTGCATTCAAGTATTCGACTCTTTGTAAGGAAAACCAAATTACTGAACAAATTTATAGAAAGTCGCTTACCTTCTTTTCTCCCTAATCTGCTCGCGCTCATCAAAAGTGCTCCCAGGATCAAAACAGCCAAGTAAAAACTCCCAGACCTCTCCCCTGATTGTAGGATGGACACCCCCTTTCTGTATCCGGTTCAGAACCGAAGCAATATCCAAACGGCCTTCACGCGTAAACGCAGCATGCCATTTCCGAACGCTCAACGTTTTCCCAACCTTGATCTTGAACTTGGTCTCGGGGACCTTGTGGGTGCAATCCGAGCGAATCTGGTAGAACCCATCTGCAACCTCCCCTTTCCCCGCCCTTCTCAGCATCCTCCTCCTCTTCCTCTTCCTCCTCCTCTAATTGCAGCTTGGATTGCTCGATCTTGTGCTCCCTTTCTGCCTCCAGCAGCAGCAGCGGCGACGAATCAAGAAGCAAGAAATCGAAGAACAATCGGTGGATCAAGAAGTCAGGACTCAGGAGAAGCAAGAAAGACTCTAGCTTTGGG

Explanation	CPC Score
noncoding	-1.13327

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0105200.1	11	22269414	T	C
Osa11LNT0105200.1	11	22267625	T	C
Osa11LNT0105200.1	11	22267890	G	A
Osa11LNT0105200.1	11	22268301	C	T
Osa11LNT0105200.1	11	22269220	T	C
Osa11LNT0105200.1	11	22269286	T	C
Osa11LNT0105200.1	11	22270354	T	C
Osa11LNT0105200.1	11	22270536	A	T
Osa11LNT0105200.1	11	22270951	A	C
Osa11LNT0105200.1	11	22271010	A	G
Osa11LNT0105200.1	11	22271367	C	T
Osa11LNT0105200.1	11	22271217	T	C
Osa11LNT0105200.1	11	22271064	A	G
Osa11LNT0105200.1	11	22270319	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0105200.1	osa-miR5817	Translation	5.0	14.423	1	24
Osa11LNT0105200.1	osa-miR5837.2	Translation	4.0	13.702	1	21
Osa11LNT0105200.1	osa-miR1441	Translation	5.0	15.15	1	21
Osa11LNT0105200.1	osa-miR827	Cleavage	4.5	20.528	1	21
Osa11LNT0105200.1	osa-miR2104	Cleavage	4.5	20.448	1	22
Osa11LNT0105200.1	osa-miR2866	Translation	4.0	9.191	1	20
Osa11LNT0105200.1	osa-miR2876-3p	Cleavage	5.0	21.381	1	21
Osa11LNT0105200.1	osa-miR171c-5p	Translation	5.0	10.487	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0105200.1	11	Xa21	Resistance or Tolerance	Bacterial blight resistance	CDO534	RZ537
Osa11LNT0105200.1	11	gw11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0105200.1	11	gpl11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0105200.1	11	yld11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0105200.1	11	chs	Others	Others	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus